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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g02090.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g07720.1 (Oryza sativa), 3'ss of exon 4
gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
     ||| | |  |  | |         ||| ||    | | | ||   |  |  ||   | ||   ||  |   |  | |    | || |||||||| || ||||| ||||||||||| ||  ||||||| || ||||| ||||| ||||||||||||
---gtaatttaaccaaaactagggacctttcagtttccatctgtagt-tgcattcttgactagtt---tgtttttgcgatggcct-tcagCGGTTATCCCTGCCCACCATACAAGATTATTATACTAGATGAAGCAGATTCGATGACAGAAGATGCCCAG

upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G103740_T01 (Zea mays), 3'ss of exon 4
gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
   |||  ||||| |  ||| ||      |   | ||| |  ||   ||| | |  |  | | |  | | | |    |  ||    | || |||||||| || ||||||||||||||||| ||  | || || || ||||||||||| ||||||||||||
--gtaag-ctcatcaaaattataaagcttt---tcagtgt-catccaactttgtattccttactagttttcttgtcgtgatggacttcagTGGTTATCCCTGCCCACCTTACAAGATTATTATACTTGACGAAGCAGATTCAATGACAGAAGATGCCCAG

upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G12210.1 (Glycine max), 3'ss of exon 5
--gtat-aaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttca----------attatgtgcctccacttttgttggtt---------agGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
  || | |||||| ||  || ||| |     | |       |            | |||||   |          || |  | |     |||||| || ||         || ||||||||||||||||| |  ||||||||  |  |||| ||||| |||||||||||||||||||| |||
gtgtgtgaaatctaatcctcttttgagacccccccccctcctcccccctcttctttttctgcctataagatttgtataacttcctcttccttttggtgttttgatatttcagTGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAG

upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G42550.2 (Glycine max), 3'ss of exon 6
--gtataaatctcattatcattttattttgctcaattagtttgtattgtactctct---tctgttcaattatgtgcctccact-----tttgttggtt-agGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
   | | ||    | | |  ||||      | |  ||  |   |  | | ||   |   | |||  || |   |   ||   |     |||| |  || || ||||||||||||||||| |  ||||||||  |  |||| ||||| |||||||||||||||||||| |||
gtatgtgaaatctaattttcttttgagacccccccttcctcctttctctgcttgttagatttgtataacttcttctttcttttggtgttttgatatttcagTGGTTATCCTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCAGATTCAATGACTGAAGATGCTCAG

upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G21690.4 (Arabidopsis thaliana), 3'ss of exon 4
gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
|| |    ||  |||| |  || ||||  |   |  | |  | || |  | ||| |  ||||  || |  ||| |  |||  |   | || ||||||||||| ||| | |  ||||| |||||| |||||||||||||||| ||||| |||||||| |||
gtgtcgtactttttattaagttttttttttttttggggtcattttctcgtttctgcatttcatctaag-accttcgatttgatacttcagTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGACAGAAGATGCTCAG

upper sequence: Vv18s0001g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ12977 (Selaginella moellendorffii), 3'ss of exon 4
gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggt-tagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
           | |    |||| | | |   ||  ||||| ||               ||   ||||| | |  |    ||| |  |  || |  ||||||||||| |||| |||  |||||||| |||| || || |||||||||||||| ||||| |||
---------gtacttcgcttttttctggacgaacgagtttatacc-------------tttgcttatgcgacctcgtcgttgcttttacagTGACTATCCTTGTCCGCCTTTCAAAGTTATCATCCTAGACGAAGCGGATTCAATGACTGAGGATGCACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035407|gb|FQ459674.1|FQ459674
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349812760|gb|FQ410402.1|FQ410402
EST:     AAGATCAAAGATTTTGCTTCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349816753|gb|FQ399621.1|FQ399621
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349812271|gb|FQ411866.1|FQ411866
EST:     AAGATCAAAGA-TTTGCTTCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351013297|gb|FQ425002.1|FQ425002
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|352786728|gb|FQ480904.1|FQ480904
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351057336|gb|FQ454018.1|FQ454018
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349817272|gb|FQ405276.1|FQ405276
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351041450|gb|FQ447577.1|FQ447577
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349813499|gb|FQ413733.1|FQ413733
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349823326|gb|FQ402525.1|FQ402525
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349819519|gb|FQ413403.1|FQ413403
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351046862|gb|FQ454472.1|FQ454472
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349808254|gb|FQ403441.1|FQ403441
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTGCAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349819764|gb|FQ404486.1|FQ404486
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351032361|gb|FQ461614.1|FQ461614
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349821638|gb|FQ411138.1|FQ411138
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349808578|gb|FQ405722.1|FQ405722
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351032565|gb|FQ458930.1|FQ458930
EST:     AAGATCGAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349807199|gb|FQ401191.1|FQ401191
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|352786607|gb|FQ479814.1|FQ479814
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349818218|gb|FQ408993.1|FQ408993
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349812350|gb|FQ406371.1|FQ406371
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349817696|gb|FQ407685.1|FQ407685
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351039610|gb|FQ461477.1|FQ461477
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349808094|gb|FQ402485.1|FQ402485
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349812745|gb|FQ409904.1|FQ409904
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351013104|gb|FQ424809.1|FQ424809
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|352790017|gb|FQ479627.1|FQ479627
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351056088|gb|FQ453549.1|FQ453549
EST:     AAGATCGAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349821172|gb|FQ408759.1|FQ408759
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349808526|gb|FQ405670.1|FQ405670
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|352798445|gb|FQ480470.1|FQ480470
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349821062|gb|FQ404315.1|FQ404315
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351045347|gb|FQ451795.1|FQ451795
EST:     AAGATCGAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGCTTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349819957|gb|FQ404679.1|FQ404679
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|71862266|gb|DT011321.1|DT011321
EST:     AAGATCAAAGATTTTGCTGCTGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349823239|gb|FQ400218.1|FQ400218
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349813551|gb|FQ413785.1|FQ413785
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351034631|gb|FQ457988.1|FQ457988
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349813295|gb|FQ411535.1|FQ411535
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351042418|gb|FQ442885.1|FQ442885
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349813150|gb|FQ411390.1|FQ411390
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|351023166|gb|FQ432549.1|FQ432549
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
EST: gi|349823132|gb|FQ400111.1|FQ400111
EST:     AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGG                         GGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC
genomic: AAGATCAAAGATTTTGCTGCCGTTGCTGTAGGATCTGGTCACCGGCAAGGgtataaatct ... tgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG
                                   cctccacttttgtt  CT-rich tract
                       ttcaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataaatctcattatcattttattttgctcaattagtttgtattgtactctcttctgttcaattatgtgcctccacttttgttggttagGGGTTATCCTTGTCCACCTTACAAGATTATCATCTTAGATGAGGCTGATTCAATGACTGAAGATGCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG