1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctcactctctgtctaaagggaaagatttgatattggatgaatgttgatatgccttcatagagcttgctaaccacatttattttcttcacctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG
species | Vitis vinifera |
transcript | Vv18s0001g01770.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTG GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTEST: gi|37188703|gb|CF608052.1|CF608052
genomic: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTGgtgagacact ... cctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTT
EST: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTG GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTEST: gi|349824926|gb|FQ406465.1|FQ406465
genomic: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTGgtgagacact ... cctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTT
EST: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTG GTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTT
genomic: TTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTGgtgagacact ... cctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTT
ttgatatgccttcatagagcttgctaaccacatttattttcttcacctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG
tgctaac putative branch site (score: 1)
tttattttcttcacct putative PPT
acatttattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcactctctgtctaaagggaaagatttgatattggatgaatgttgatatgccttcatagagcttgctaaccacatttattttcttcacctttaacagGTCACAGCTCCTGGAGGAAGGAACAGGGATAGAAAGAGCGACTTGCTAGTTATACGTGATAAGGGGAACTCCTTCAAAATAATTCATGCG
- - cactctc
- - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - gccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacca