Sequence
atgc intronic sequence ATGC exonic sequencegtttgttttcttccactaactgtggtgtctaatcaattacaccattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G24660.1 (Glycine max), 3'ss of exon 6
gtttgttttcttccactaactgtggtgtctaatcaatt-acaccattaagtcctcat-agaatg--ttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
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gtgtgtatcgtatcttgtact----tgtttgattttttgagatcaatttgtcgaaaagaaaatggtttatttttaacatgtttttttatatgatttcagAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGTTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGT
upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G09620.1 (Glycine max), 3'ss of exon 6
--------gtttgttttcttccactaactgtggtgtcta--atcaattacaccattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
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gtgtctgtgtattttatcttgtacttgtttgactctttgagatcaatttgtccaaaagaaaaaggcttatttttaacatgttttttttttcttgtatgttttcagAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGTTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGT
upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G12410.1 (Glycine max), 3'ss of exon 5
gtttgttttcttccactaactgtggtgtctaatcaattacaccattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
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gtttgtttcctagtgttagtttgactgggt--tcaatt-tatcaaaatggtttattttagtatcttttaatgtggttaccattgtg--attttagAAAACTTGATCGGGAAAGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTCAAGATCCTAAATCCTTCTGATGATGT
upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G42390.1 (Glycine max), 3'ss of exon 5
gtttgttttcttccactaactgtggtgtctaatcaattacaccattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
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gtttgtttcctagtgttagtttgactgagt--tcaatttaacaaactggtttatttctatcttttaatgtggttaccaat-----gtgatttcagGAAACTTGATCGGGAAGGGAGGAAGCAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCCGTCAAGATTCTAAAGCCTTCTGATAATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
ttttctgtcatttc CT-rich tract
atagaatgttagttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttttcttccactaactgtggtgtctaatcaattacaccattaagtcctcatagaatgttagttaaaataatcagttttctgtcatttcagAGAATTTGATTGGAAAAGGTGGAAGCAGTCGGGTATATAGAGGTTGTCTTTCTGATGGCAAGGAATTGGCAGTGAAAATCTTGAAGCAATCTGATGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA