1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatttattccaaaaaattattggacaacacgtatgttactgtatgttctctatgattttttggaaatgaaatttgattacctagtctgataattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTACTCCACCCCAAACCCAGCCAATAATTCACCCTACTTCAGTCTACGATG
species | Vitis vinifera |
transcript | Vv18s0001g01180.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGAGG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|110697681|gb|EE074884.1|EE074884
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|77587150|gb|DV222704.1|DV222704
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGAGG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|110724482|gb|EE100348.1|EE100348
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|32269534|gb|CD718693.1|CD718693
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: CCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|110696101|gb|EE074878.1|EE074878
genomic: CCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|161716239|gb|FC066502.1|FC066502
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGAGG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|161718465|gb|FC067304.1|FC067304
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|110721049|gb|EE097599.1|EE097599
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTEST: gi|161717089|gb|FC069551.1|FC069551
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
EST: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACG TCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
genomic: GACCTAGGGGAAGATATCCCCAATACTATGCTGCATATAATGAACTGACGgtaatttctt ... taattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTT
gttctctatgattttttggaaatgaaatttgattacctagtctgataattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTACTCCACCCCAAACCCAGCCAATAATTCACCCTACTTCAGTCTACGATG
gtctgat putative branch site (score: 4)
aaatgaaatttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttattccaaaaaattattggacaacacgtatgttactgtatgttctctatgattttttggaaatgaaatttgattacctagtctgataattgacagTCGGCTGGAGTAGAATTTCCACCCCGAGCAGAGAACAGTGTCCCATTGTTTACTCCACCCCAAACCCAGCCAATAATTCACCCTACTTCAGTCTACGATG
- - - - - -aaaaaat
- - - - - - - - - - - - -caacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa