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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgagttttatcgattggattttcagtctcattctttgtgtcatttttgtgcctaagatatgaccagtttagtttgcagAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAAC

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 4
----------------------gtgagtgagttttatcgatt--ggatttt---cagtctcattctttgtgtcatttttgtgcctaagata--tgaccagtttagtttgcagAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAAC
                       |       |||| |   ||   |||||    ||||   |  |||    |||||    |  || |  ||  ||   |  | | |||||||||||| ||||||||||||||||| || |||||  ||||||| |||||| |||| ||  |||| || |||||||||||| | || || |||||  | ||| 
gtaagaatttcttaataatcttttcttcctatttttttagttctagatttgagacagttagaaccttca-atcattcaattctctgaattaattgtttaaatgattttgcagAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAAT

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 4
---------------------------------------gtgagtgagttttatcgattgga-ttttcagtctcattctttgtgtcatttttgtgcctaagatatgaccagtttagtttgcagAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAAC
                                       ||    || ||    | ||| ||   |||| ||   |   |||| | | ||   ||   || || | |   ||| | || ||||||||| ||||||||||||||| | || |||||  ||||||| |||||| |||| ||  |||| || |||||||||||||| ||  | |||||  | ||| 
gtaagaagtttttaataatcttttcttgttatttttttagttctagatttgagacaattagaaccttcaatcat-tcaattgtctgaattaattgttcaa-atgtcat-ggttgatttcgcagAACAAGTGGATGGAGCTATTTTCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTGGCCATGGTGGTTCTTTGCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctcattctttgtgtcatttttgtgcctaagatatgaccagtttagtttgcagAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAAC
                tcattttt  TA-rich tract