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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgacaaaatcctggtcctatttctttaaaagaaattgtgacaacatatgtttggaatttgggatataatgatataactgttgtttttcaatagGTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g10130.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G36770.1 (Glycine max), 3'ss of exon 4
gtagattgacaaaatcctggtcctatttctttaaaagaaattg-tgacaacatatgtttggaatttg-----ggatataatgatataactgttgttttt-caatagGTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAG
        ||| | |  | |     |   ||||  ||   ||| || |  |      ||| || ||      ||  ||  | || | ||| || ||| | |   |||||||||||||||||| || || |||||| | || ||||||||||||
------acacacagttgttgataattgagtttactagcttttgctggctgctcccagttgaaaatttcgtgtggtgattgttattttacttttatttgtgctccagGTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAG

upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagattgacaaaatcctggtcctatttctttaaaagaaattgtgacaacatatgtttggaatttgggatataatgatataactgttgtttttcaatagGTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAG
||||||  | | |    | ||  | ||  |  |     | |  |  | | | || |||| || ||                  | || || || | |||||||||| ||||| || |||||||||||| | |||||||||||||||
gtagatgaaaagatctttagttattttcttgcattttcattcctttcgagacatatttgtaagtttc---------------ttttttttgttgattagGTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaacatatgtttggaatttgggatataatgatataactgttgtttttcaatagGTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAG
                                atataac  putative branch site (score: 3)
                                         ttgtttttc  putative PPT
                        atataatgatataact  TA-rich tract