Sequence
atgc intronic sequence ATGC exonic sequencegtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaattatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G13570.1 (Glycine max), 3'ss of exon 3
gtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaattatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcat-tccttgatttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATG
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---------------------------------------------------tatttgttgcctgctttattttttttttgtg--tctatggcaattggattatataaataaacacataactca---tacttgtttgcacactcttgatatttacagGAACCCTATCAGCTGGTTGGAACTACTGTTGCTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGGGATG
upper sequence: Vv17s0000g09870.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G02910.1 (Glycine max), 3'ss of exon 3
gtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaattatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATG
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----------------------------------------------gcctgctttattttt-----taattttttttccctgcatctattgcaattggactacataaaagcacataacacata-cttgtttacatac---tcttgctatttacagGAACCCTATCAGCTGGTTGGAACTACTGTCACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGAGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384166|gb|EC948585.1|EC948585EST: ATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAG GAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATAT
genomic: ATGGTGAGTCACATATTGATCGAAATGATCCCAACTATGATAGCGGCGAGgtatttgctt ... atttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggagctattactgctattactgagcttaaataatttcattccttgatttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATG
ccttgat putative branch site (score: 5)
ttaaataatttcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttgcttttctaattcaatcaacccttctcatgctttttgatttcttatactaattatgtgaatggctatagtcccatccttctcctgcagtggaatggagctattactgctattactgagcttaaataatttcattccttgatttcaacagGAACCGTATCAGCTTGTTGGGTCCACGATTTCAGACCCCTTAGATGAATATAAGAAAGCAGTGGTTTCCATCATAGAAGAATATTTCAGCACTGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA