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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaattcatcattattctgttccttaacacagcacttctattgactgacctgttcttgatttcatattttttcccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGTTGTGGAATAAGGGTACGTCAGCCGCATCTTGATAGCCGCTTTATTTTGG

Basic information

species Vitis vinifera
transcript Vv17s0000g09280.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727900|gb|EE105187.1|EE105187
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110376807|gb|EC941885.1|EC941885
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110699168|gb|EE075929.1|EE075929
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110377542|gb|EC942615.1|EC942615
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110724176|gb|EE099776.1|EE099776
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|161720484|gb|FC070596.1|FC070596
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110382256|gb|EC938988.1|EC938988
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|30125971|gb|CB911310.1|CB911310
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110726600|gb|EE102523.1|EE102523
EST:     CTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: CTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|30306027|gb|CB982821.1|CB982821
EST:     ATGGTCTTTCAAGACGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT
EST: gi|110702298|gb|EE080854.1|EE080854
EST:     ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCT                         ATGCAACAACCTGAGGTTCATTTCCCAGCACAACCCTATCCCAGTATAGGT
genomic: ACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTgtatgtaaat ... cccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacagcacttctattgactgacctgttcttgatttcatattttttcccctcatagATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGTTGTGGAATAAGGGTACGTCAGCCGCATCTTGATAGCCGCTTTATTTTGG
                                tttcatattttttccc  CT-rich tract
                            ttgatttcatattttt  TA-rich tract