Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaaatctacgttccaattctttctacagatacttattgtagatgaatttcaaatttaggcaatgttttaatcataagttggccccacatacatttactagGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT

Basic information

species Vitis vinifera
transcript Vv17s0000g09100.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g38010.1 (Oryza sativa), 3'ss of exon 4
gttggttaaatctacgttccaat-tctttctacagatacttattgtagatgaatttcaaatttaggcaatgttttaatcataagttggccccacatacatttactagGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT
  |    |||   |  | || |  || |||| |   | ||  |   |      || | ||   |   ||   || || ||| |  ||   | |  |  || ||   ||||||  || ||  |  |||| ||||||||||| |  || ||| |||||||||| || || ||||||||||| || |||||| |||||||||| ||||||
--taaacaaaaggatttccctacatccttcttctcgtcctcctccgattcttgttgcgaaacaatagaac-cttgaaacatgacctg-ttctagttgaatata---gGTGTGCAGGATATTACAGTGATGCTGATGCTCCCAATCGAAGAATTGCCAAACCTCTGATCTTCTGTAGAACTGAAAGTGATAGCCCTATGGAGAATGGT

upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G147884_T01 (Zea mays), 3'ss of exon 4
gttggttaaatctacgttccaattctttctacagatacttattgtagatgaatttcaaatttaggcaatgttttaatcataagttggccccacatacatt----tactagGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT
||   ||| || || |  |    |    ||| |  |      | | | |   |||||| ||   |||   |  || |  ||| |||     | |   |||    |   ||||||| ||| ||| |  | ||||||||||||||||| || ||||||| ||| ||  | ||||| || ||||| ||||||||| |||| ||||| ||||||
gtaatttatatataagggctttcttgggctaaaattttcctattttgctatgtttcaactt---gcatcatcatatttgtaaattgaaaggaaagttattaaattgtcagGTGTGCTGGCTACTACAGCGAAGCTGATGCTCCTAGTCGCAGACTTGGCAAGCCTTTGATATTTTGCAGAACTGAGAGTGATAGCCCCATGGAGAATGGT

upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G18810.2 (Glycine max), 3'ss of exon 4
gttggttaaatctacgttccaattctttctacagatacttattgtagatga----atttcaaatttaggcaatgttttaatcataagttggccccacatacatttact--agGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT
  |  ||  |  |   |  | ||| ||  || |  |  ||  ||||||       |||  |  | |  ||| | | || ||      ||    |  ||||  | |  |  |||||||||||||| ||  ||||||| ||||||||| |    |||||||| |||||||||||||| ||| || | |||||||| || |||||||||||||| 
-gtaattttagttggatgaccattgttgatatatctcttttctgtagacattgttattctatctctttgcattttctttattgagtctttattctgcataactctgttgcagGTGTGTTGGTTATCACAGTGAAGCAGATGCTCCTGGGAAAAGACTTGCTAAACCACTCATATTTTGTCGATCCGAGAGTGACTGTCCTATGGAAAATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcaaatttaggcaatgttttaatcataagttggccccacatacatttactagGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGT
                   ttttaat  putative branch site (score: 3)
               aatgttttaatcataa  TA-rich tract