1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gggtgcaatccgtacacacacagtgtgtataaaattagagaactcattcaaactgtgagggaagcagggcatgtaaccaaattatggaatttgctgacagGTTGGGCTCATTTGAAGCTGTTAGAGACAGCAAATGAAGGAAGACTAGCTGCCTATCCTGATTCAGATCAAATAGGACAAGCGAAGGGTGGTGTTGGCGC
species | Vitis vinifera |
transcript | Vv17s0000g08630.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
attcaaactgtgagggaagcagggcatgtaaccaaattatggaatttgctgacagGTTGGGCTCATTTGAAGCTGTTAGAGACAGCAAATGAAGGAAGACTAGCTGCCTATCCTGATTCAGATCAAATAGGACAAGCGAAGGGTGGTGTTGGCGC
atgtaac putative branch site (score: 3)
aaattatggaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgcaatccgtacacacacagtgtgtataaaattagagaactcattcaaactgtgagggaagcagggcatgtaaccaaattatggaatttgctgacagGTTGGGCTCATTTGAAGCTGTTAGAGACAGCAAATGAAGGAAGACTAGCTGCCTATCCTGATTCAGATCAAATAGGACAAGCGAAGGGTGGTGTTGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -tgcaatc
- - - - - - -acacaca
- - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa