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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgggaccataaagttaattatttattgcaaagaatgaattagtcttcaaacatttcaagttagttaccatgatatagaacataataaacttttcttttggtaattttactttagttttttttttttcacagGCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAATAGTATACCTACTTACAAGCAACCTGCATCTGCTGTATATAAGTGTCTA

Basic information

species Vitis vinifera
transcript Vv17s0000g08200.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22009715|gb|BQ794749.1|BQ794749
EST:     GACAACTTAACAGTCCTACAAGCTGGTTTAGTTGGGCTTGATTTTCGAAG                         GCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAA
genomic: GACAACTTAACAGTCCTACAAGCTGGTTTAGTTGGGCTTGATTTTCGAAGgtatgtggga ... tttttcacagGCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAA
EST: gi|22008705|gb|BQ793739.1|BQ793739
EST:     GACAACTTAACAGTCCTACAAGCTGGTTTAGTTGGGCTTGATTTTCGAAG                         GCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAA
genomic: GACAACTTAACAGTCCTACAAGCTGGTTTAGTTGGGCTTGATTTTCGAAGgtatgtggga ... tttttcacagGCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacataataaacttttcttttggtaattttactttagttttttttttttcacagGCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAATAGTATACCTACTTACAAGCAACCTGCATCTGCTGTATATAAGTGTCTA
                           ttttactttagttttt  CT-rich tract
             ttttcttttggtaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtgggaccataaagttaattatttattgcaaagaatgaattagtcttcaaacatttcaagttagttaccatgatatagaacataataaacttttcttttggtaattttactttagttttttttttttcacagGCATAGGGATCTTTCTTTTGGTCCTGGTGAAGTCAGATTTGTCGACATCAATAGTATACCTACTTACAAGCAACCTGCATCTGCTGTATATAAGTGTCTA

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