Sequence
atgc intronic sequence ATGC exonic sequencegtgctttggtatcttacattttttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G31180.1 (Glycine max), 3'ss of exon 4
gtgctttggtatcttacattttttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
|| | |||| || | | |||| | || || || || | ||| ||| | | || | | | |||||| | ||||||||||| ||| |||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||
gtacattggcatttgatgttttcat-tgaatcttgaaccattatattaacttctgaacttctgcaagtttaatacagGAAAAACAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTTTATCAAGTAGACAAGCTGAAAGAAGAGGGACTCATATCAAATATAAACTATGATGA
upper sequence: Vv17s0000g04680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 4
-----gtgctttggtatcttacattttttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
||| |||| ||| | | | || || ||| | ||||| ||| | | || | | | |||||||||||||||||||| ||| |||||||| ||| |||| || ||||||||||| | || ||||||||||| | ||| | | |||| |||||||||
gtgcaatgcaagtgtat-ttaaagacctactcgaatcttgaatcaataaattaacttctggatttctgcaaattttatacagGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGTTTCATATCAGACATAATCTATGATGA
upper sequence: Vv17s0000g04680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G09020.1 (Glycine max), 3'ss of exon 4
-----gtgctttggtatcttacattttttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
||| |||| ||| | | | | || || || | ||||| ||| | | || | | |||||||||||| ||||||| ||| |||||||| ||| |||| || ||||||||||| | || ||||||||||||| |||| | |||| |||||||||
gtgcaatgcaagtgtat-ttaaagacctacttgaatcttggatcaataaattaacttctggatttctgcaaattctatacagGAAAGAAAAGGGAAGATATTGAGAACTTCATAAATAAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCTTAACAGACATAATCTATGATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
atttttaattatcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctttggtatcttacattttttcctagatttttaattatcaaatttgcttactttgatttttaattgtcgcatagGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA