Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA

Basic information

species Vitis vinifera
transcript Vv17s0000g02900.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g49190.1 (Oryza sativa), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgcct--tagttatttcttattgatttgtatggtctattga---atctcatatctctcttt-cttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
                 ||  |||  | || || |  | || || ||  |  |  ||||   ||  ||||    ||||  |    || |||  || ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| || |||||||| ||||||||||| || ||
---------------gtttgctttctacagagcttgatggtcatatccaaa-gtcttgtgctgtgcattgccttatctggttgacctgtttattttagGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGTGACAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g47980.1 (Oryza sativa), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
    ||   |||  | |  || | | |  |||   || || ||     || | |    || ||||||  |      ||   |  ||   |||||||||||||||| ||||||||||| || ||||| || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||| || || ||
----gtatgcatctatacatagtctcat-gtgtgata-ttgttcaaatttcagtcacttgttctatttgactgatgatgatttgtttgccagGTGGTTTCTCTGTGTTTGCTGGTGTTGGTGAACGTACCCGTGAAGGTAATGATCTTTACAGGGAAATGATTGAAAGTGGTGTCATCAAGCTAGGTGACAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G041275_T01 (Zea mays), 3'ss of exon 4
-gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
  ||| ||    |||| |  |   | |  | ||   |    | |  | ||   ||| | | | ||  |  ||  |||     ||||  |  ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||
gtttgtttttttttcagagctggatggcca-tgttgtga--aatcatcatgtgtttatgttggcttatttattccat----ttcttcatctagGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAACGTACTCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGACGATAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G021331_T01 (Zea mays), 3'ss of exon 4
gttggttcccattcaaattt-attttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
||| || |     ||| ||| ||| | ||  || || ||||   |||| |||  |  | || | | |   ||||  | |   ||| | |  ||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||  |||||||||||||||| |||||||||||||||||||| || || ||
gttagtactgtaccaagtttcattgtcaatttggctcagtt---tcttgttggatcttctgat-tgtgatatctgctttgcttctatgt--agGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGTACCCGTGAAGGGAATGACCTGTACAGAGAAATGATTGAAAGTGGTGTCATTAAGCTAGGTGACAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G113408_T02 (Zea mays), 3'ss of exon 4
gttggttcc-cattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
|||||| |   |   |  |||  | | ||  || || ||||   |||| |||  |    || | | |   | ||  | | | ||||| |  ||||||||||||||| ||||||||||| |||||||| || ||||| || |||||| ||||||| |||||||| |||||||||||||||||||| |  || ||
gttggtactgtacctagtttttctgtcaatttggctcagtt---tcttgttggatctgctgat-tgtgatagctgctttgtttctttgt--agGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGTACCCGTGAAGGTAATGATCTGTACAGGGAAATGATTGAAAGTGGTGTCATTAAGCTAGATGACAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G41330.1 (Glycine max), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
    ||    ||  | | ||| |||     ||    | |  | | |||    |   |   || |  ||   || |    |  | ||  | ||||||||||||||| ||||||||||| |||||||| || || ||||| ||||| ||||||||||||||||| || |||||||||||||||||||  || ||
----gtatgtatgtacacttagtttattcttggtaaaatgttcttttacctttccatgctgtatgctg---ctgactgtttccattgattagGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGATGATAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G25920.1 (Glycine max), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
||  ||    | |     ||| |||     |     | |  | | |||    | | |   || |  ||| | |      |  | ||  | ||||||||||||||| ||||||||||| ||||| || || || ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| || ||
gtatgtatttagt-gcgcttagtttattctttgtaaaatgttcttttacctttctatgctgtatgctgactgt------ttccattggttagGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAGCGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G08670.1 (Arabidopsis thaliana), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
||  |||   |    || || || |||     ||||| |  | |||      ||  |||    |||| | |      | |   |||   |||||||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| || ||||||||||| ||||| ||||| ||
gtctgttt--agcacaagttgttctga-----ccttattagtctctct---gttcctat---ttattaattggtgcgttttcttttgaacagGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGAACCCGTGAAGGCAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAAAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G08680.1 (Arabidopsis thaliana), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgcctta--gttat-ttcttattgatttgt--atggtctattgaatctcatatctctctttctt--cagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
                || || |||    ||   |||  ||  | | |  | || | |     |  | | || | | |  |   |||  |  |    |||||||||||| || |||||||||||||||||||| || ||||| || ||||||||||||||||||||||| || ||||||||||| ||||| || |||||
--------------gtatgtactttccgggtagtttaaagtagtgtgcacagtggtgttccagtttttttttaactttggtgcttcttctgatgaatagGTGGTTTCTCCGTGTTTGCTGGTGTGGGAGAACGGACCCGTGAAGGCAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGAGAGAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G08690.1 (Arabidopsis thaliana), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
||  |||   |    || || || |||  ||   |||||  | |||      ||| |||    |||| | |      |||     |    |||||| |||||||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||
gtctgttt--accacaagttgttctgaccgta--ttagtc-tctct-----gtttctat---ttattaagtggtgcttcttctgatgaatagGTGGGTTCTCTGTGTTTGCTGGTGTGGGGGAACGAACCCGTGAGGGCAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATCAAGCTAGGCGAGAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ31624 (Selaginella moellendorffii), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
                                        | |    |  | ||| |||   |||   |      | |   ||||||   ||||||||  ||||| ||||||||||| || |||||||||||||| || || ||| | |||| ||||||||| |||||||||||||| ||||| || || ||
------------------------------------gtacactggccaccggttt-tataagctacatagctcagtgttgatctttc---agGTGGTTATTCTGTGTTTGCTGGTGTCGGGGAACGCACTCGTGAAGGAAACGATCTCTACAAAGAAATGATTGAAAGTGGTGTCATCAAGCTGGGTGACAA

upper sequence: Vv17s0000g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ38525 (Selaginella moellendorffii), 3'ss of exon 4
gttggttcccattcaaatttattttgaaagtgccttagttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
                                        | |    |  | ||| |||   |||    ||  |  |    |  |  |||||||||||  ||||| ||||||||||| || |||||||||||||| || || ||| | |||| ||||||||| |||||||||||||| ||||| || || ||
------------------------------------gtacactggccaccggttt-tataagctac---atagctcactggtgatctttcagGTGGTTATTCTGTGTTTGCTGGTGTCGGGGAACGCACTCGTGAAGGAAACGATCTCTACAAAGAAATGATTGAAAGTGGTGTCATCAAGCTGGGTGACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023372|gb|FQ432755.1|FQ432755
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGG
EST: gi|110732337|gb|EE107534.1|EE107534
EST:     GNAAACTGGTCTTATTATGGAACTTATTA-CAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTT
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTT
EST: gi|110724937|gb|EE101202.1|EE101202
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|110688264|gb|EE066616.1|EE066616
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|161707022|gb|FC055130.1|FC055130
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTCTCTGTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTT-TCT--CTGTCTTTGCTGGTGTGGGAGAACGCACTCGTG
EST: gi|351019677|gb|FQ439494.1|FQ439494
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|110688946|gb|EE068082.1|EE068082
EST:     GAAA-CTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTG
EST: gi|110389138|gb|EC953954.1|EC953954
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|110359453|gb|EC920958.1|EC920958
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|110702280|gb|EE080812.1|EE080812
EST:     AAAAACTGGTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGAGGA-T
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGG-GGAAT
EST: gi|161721398|gb|FC071064.1|FC071064
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|351027762|gb|FQ446929.1|FQ446929
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACCCACTCGTGAGGGGAAAT
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAA-T
EST: gi|349823703|gb|FQ415113.1|FQ415113
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|351028401|gb|FQ427297.1|FQ427297
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|161710369|gb|FC061091.1|FC061091
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAAC-CACTC
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTC
EST: gi|349826477|gb|FQ418568.1|FQ418568
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGGATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|352789612|gb|FQ476210.1|FQ476210
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GGTGGTTTCTCTGTCCTTTGC
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagG-TGGTTTCTCTGTC-TTTGC
EST: gi|349823820|gb|FQ415231.1|FQ415231
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAACCTCATG                         GTGGTTTCTCTGTCTTTG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTG
EST: gi|351030186|gb|FQ432124.1|FQ432124
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCAGG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|161716057|gb|FC065545.1|FC065545
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|110356708|gb|EC919733.1|EC919733
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|352782351|gb|FQ470254.1|FQ470254
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCCTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|352787189|gb|FQ477809.1|FQ477809
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|349826538|gb|FQ418629.1|FQ418629
EST:     GAAAACTATTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGGTTCTCTGTCTTTGCTGGGTGTGG-AGAACGCACTCGTGAGGGGGAT
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGG-TGTGGGAGAACGCACTCGTGAGGGGAAT
EST: gi|110698394|gb|EE075844.1|EE075844
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGGTGCTAAAGCTCATG                         GGGGTTTCTCTGTCTTTGCTGGGGTGGGAGAACGCACTCGTGGAGGGGA-T
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTG-AGGGGAAT
EST: gi|351022974|gb|FQ428883.1|FQ428883
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|351040271|gb|FQ425357.1|FQ425357
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|352795075|gb|FQ477185.1|FQ477185
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAG
EST: gi|351028760|gb|FQ433190.1|FQ433190
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGG
EST: gi|71860596|gb|DT009651.1|DT009651
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
EST: gi|349823819|gb|FQ415230.1|FQ415230
EST:     GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATG                         GTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG
genomic: GAAAACTGTTCTTATTATGGAACTTATTAACAATGTTGCTAAAGCTCATGgttggttccc ... ctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttcttattgatttgtatggtctattgaatctcatatctctctttcttcagGTGGTTTCTCTGTCTTTGCTGGTGTGGGAGAACGCACTCGTGAGGGGAATGATTTGTACAGAGAAATGATCGAAAGTGGTGTCATTAAGCTTGGCGAGAA
         tattgat  putative branch site (score: 3)
                                 tctcatatctctcttt  putative PPT
        ttattgatttgtat  TA-rich tract