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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttccaacaaaattaaaatctttcatgctaaattgaacataatttgagcccacaagttatatttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGT

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 4
---------------gtaaattttccaacaaaattaaaatctt----tcatgctaa-attgaacataatttgagcccacaagttat-----atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGT
               | | |  | | |    ||||  | | ||     | |  |   ||||  ||||  ||   | ||    || |     | | ||||||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||||| |||  ||||| || |||||||||  |  ||| ||
gtaacttccgttgtagcatacatactatttgaattgtagtgttaataccttattgttattgttcatatgttcc-ctcattgattgtctcaaactattgtagGTATTACTCCATATGCAAATCTCTACCATTATGATCTTCCTTTAGCACTTGAGGAGAGGTACAACGGATTATTGAGTCGCCAAGTTGT

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 4
---------------------gtaaattttccaacaaaattaaaatctttcat-gctaaattgaacataatttgagcccac-aagttatatttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGT
                      |||| |||  ||   | |   |||   | || | ||   |  |  |  |        |    || | | | ||| ||| ||||| ||||||||||||||||| || ||||| |||||||| ||||||||| |||  ||||| || ||||||||      ||| ||
gtaacttacattgtagcatgcataaaatttgaaatgtagtgttaataacttattgttattgttcatttgttcctcattgattgtgtgaaactattgcagGTATTACTCCATATGCAAATCTCTACCATTATGATCTTCCTTTAGCACTTGAGGAGAGGTACAACGGATTATTGAGCCGGCAAGTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110691322|gb|EE069288.1|EE069288
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCGCTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110690437|gb|EE067536.1|EE067536
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAGCTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTCTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110687898|gb|EE065834.1|EE065834
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110688342|gb|EE066782.1|EE066782
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     GAAGGGAGTTGCCTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTC-AAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110690651|gb|EE067999.1|EE067999
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|110694692|gb|EE072021.1|EE072021
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGTACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAG                         GCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG
genomic: GAAGGGAGTTGCTTACTACAATAGACTGATCAACTACCTGCTCAAAAAAGgtaaattttc ... atttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctttcatgctaaattgaacataatttgagcccacaagttatatttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGT
          tgctaaa  putative branch site (score: 2)
                                            tattttt  putative PPT
             taaattgaacataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattttccaacaaaattaaaatctttcatgctaaattgaacataatttgagcccacaagttatatttttgtagGCATTACCCCATATGCAAATCTCTATCACTATGACCTTCCTTTGGCACTTGAGAAGAAATACAATGGGTTATTGAGTTACAGAGTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA