Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaatggtgacaagtcaattcctgaagttccattgatgcactcaagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G17500.2 (Glycine max), 3'ss of exon 1
---tgtaaatggtgaca-agtcaattcctgaagttccattgatgcact-caagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
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aacaaagaatgcttacatactttatctatgaaagagtaatg-tgcatttctagtatggttttcttacacatgtta-acgaccatattttgatttatgt---gcagTCAACATATGAAAATTTTAGATACCGTTATGACCAACAAGCCAACCCTTATGACAAAGGAGTAGCTGCGAACTTCAGAGAAATATTTTGCTCCAGCATTC
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G01290.1 (Glycine max), 3'ss of exon 4
--tgtaaatggtgacaagtcaattcctgaagttccattgatgcactcaagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
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gatg-atatggatacatgtaaacaa-tgaagaactatggtgccttcctagtttggttttcttatgtgtatgttaatgaaaattctttttgtcttatttgcagTCTACTTATGAAAATTTTAAAAACCGGTATGACCCACAAACCAACCCATATAACAGAGGGATGGTTAACAACTTCAAAGAAGTATTCTGCACCAGAATTC
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G37560.1 (Glycine max), 3'ss of exon 4
--tgtaaatggtgacaag-tcaattcctgaagttccattgatgcact-caagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
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tatgtaatggtatgcatgctttatctatgaaaaactaatg-tgcatttctagtacagttttcttacacacttaatg-actgttccttttgttt-catatg-cagTCTACTTATGAAAATTTTAGATACCGGTATGATCAACAATCCAACCCTTATAACAAAGGAGTAGCTGCAAACTTCAGAGAAATATTTTGCTCCTGCATTC
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G38360.1 (Glycine max), 3'ss of exon 4
-------tgtaaatggtgacaagtcaattcctgaagttccattgatgcactca-agctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
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tgtatggatcatatggatacaagtaaacaa-tgaagaactat-ggtgcattcctagtttggttttctaacgtatgttaatgaaaattctgtct-----tatttg-cagTCTACTTACGAAAATTTTAAATACCGGTACGACCCACAAACCAACCCATATAACAGAGGGATGGTTAACAACTTCAAAGAAGTATTCTGCACCAGAATTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721421|gb|FC071075.1|FC071075EST: TTGTNNNNNNNCTTTCTGTCTTCCATTTGTATCTCATCAGTACAAACCAG TCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATAT
genomic: TTGTGGGGGGGCTTTCTGTCTTCCATTTGTATCTCATCAGTACAAACCAGgtaagaaact ... tgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
gtgtaac putative branch site (score: 3)
aagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaatggtgacaagtcaattcctgaagttccattgatgcactcaagctaagttttcttggaggtgtaacacattgctctccttgtatgtgtttggcagTCTACATATGAAAATTTTAGATACCGATATGACCGGCGAGCCAACCCATATAACAAAGGGGTGATTGAGAACTTCATGGAGATATTCTGCACCAGCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - tggtgac
- - - - - - - - -caattcc
- - - - - - - - - - - - - - - -ccattga
- - - - - - - - - - - - - - - - - - - - - ctcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaca