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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaactaacttcttatcgatttgatggatctatatatacacctctccccttgatctcacccactttgttttgatgtatttccatggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACG

Basic information

species Vitis vinifera
transcript Vv17s0000g00400.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419582|gb|EC985821.1|EC985821
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|22015508|gb|BQ800542.1|BQ800542
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110394034|gb|EC958407.1|EC958407
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|30305673|gb|CB982467.1|CB982467
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|160482081|gb|EY255058.1|EY255058
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110411522|gb|EC977239.1|EC977239
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|161715501|gb|FC067093.1|FC067093
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110706767|gb|EE082591.1|EE082591
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
EST: gi|110405066|gb|EC970596.1|EC970596
EST:     ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGAT                         GCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT
genomic: ACAACCTGGTCTCTTTTCTGAACAATGCCAAGGGGGCGACTGTGGGTGATgtgagtgaac ... catggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacctctccccttgatctcacccactttgttttgatgtatttccatggtgcagGCTGTGAAGAATCTAGGACTGTGGGGTCTCTTCACCCGTGGTCTTCCTCTTCGTATAGTCATGATTGGAACCCTTACAGGAGCCCAATGGGGTATCTACG
                                       tatttcc  CT-rich tract
                           tttgtttt  TA-rich tract