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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagacatgcatttcttttccttctgatttttattaccatcttatctgaagtttgaattctgaaatgttttaagcattcgggttttgttgatacagGGCAGAGTTTGTATGGGACTGTTGGGAGTCCATTTTACATAGCTCCTGAGGTACTGGCAGGGGGTTATAACCAGGCTGCCGATGTATGGAGCGCCGGAGT

Basic information

species Vitis vinifera
transcript Vv16s0100g00340.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G38460.1 (Glycine max), 3'ss of exon 3
gtaaagacatgcatttcttttccttctg-atttttattaccatcttatctgaagtttgaatt------ctgaaa----tgttttaagcat-----tcgggttttgttgatacagGGCAGAGTTTGTATGGGACTGTTGGGAGTCCATTTTACATAGCTCCTGAGGTACTGGCAGGGGGTTATAACCAGGCTGCCGATGTATGGAGCGCCGGAGT
      || ||| ||| ||  | | ||       |||||  |||||   || | |||  |||      ||||||    |||||| | | |     | ||| |||| | |  |||| ||||||||| |||||   |||||||||||||| || |||||||| |||||||||||||| |  |||||||||||||| ||||| ||||| || || ||
----gtacttgctttttttcgcttcctttgcagatattaa-atcttccttgcaatttccattgctccactgaaaatgttgttttcatcttcaaaattggggtttggttaagcagGACAGAGTTTGCATGGGTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGT

upper sequence: Vv16s0100g00340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G32390.1 (Glycine max), 3'ss of exon 1
gtaaagacatgcatttcttttc----cttctgatttttattaccatcttatctgaagtt-tgaat-tctgaaatgtt-----ttaagcattcgggttttgttgatacagGGCAGAGTTTGTATGGGACTGTTGGGAGTCCATTTTACATAGCTCCTGAGGTACTGGCAGGGGGTTATAACCAGGCTGCCGATGTATGGAGCGCCGGAGT
|||   || | |  |||  ||      || | || ||| || | || ||   ||    | ||||| | ||  |||||     | ||| ||| ||| |||||| |  |||| ||||||||| |||||   |||||||||||||| ||||||||||| |||||||| || || |  |||||||||||||| ||||| ||||| || || ||
gtacttactttctcttcaatttgcgttttataatctttttttcaattttggttgctcctatgaatatgtgtgatgttcatcttcaagtatt-gggatttgtttaagcagGTCAGAGTTTGCATGGGTTAGTTGGGAGTCCATTCTACATAGCTCCAGAGGTACTAGCTGGTGCATATAACCAGGCTGCTGATGTGTGGAGTGCTGGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctgaagtttgaattctgaaatgttttaagcattcgggttttgttgatacagGGCAGAGTTTGTATGGGACTGTTGGGAGTCCATTTTACATAGCTCCTGAGGTACTGGCAGGGGGTTATAACCAGGCTGCCGATGTATGGAGCGCCGGAGT
                                            tgttgat  putative branch site (score: 4)
                                         ttttgtt  CT-rich tract
                     aaatgttttaa  TA-rich tract