1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttctaatatttccatcttaaaaaattctattcattgcatcagtaaataatctgcttcaaattcctttcaatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGGATGTGAGCTTTGATTGTGCCGGCTTTGATAAAACCATGTCAACCGCTC
species | Vitis vinifera |
transcript | Vv16s0100g00300.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAATGEST: gi|110407824|gb|EC973441.1|EC973441
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGAACTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|83276223|gb|DV940231.1|DV940231
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|110718284|gb|EE094941.1|EE094941
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTCCGACAAATATTCAG GATGTAGCTGAAGAAATGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|110732129|gb|EE107144.1|EE107144
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|27581705|gb|CB004400.1|CB004400
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAA-GGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCEST: gi|110408106|gb|EC973729.1|EC973729
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGC
EST: CAAAGGAACTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|110713228|gb|EE088964.1|EE088964
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAG-ATCTTGGTGCAAATGANATTGTTAAAGTTTCNACAAATATTCAG GATGTANCTGAAAAAGTGGTGCAAATACACAAAGCTATGGGACCTAGAGTGEST: gi|110370270|gb|EC929261.1|EC929261
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|110361632|gb|EC925120.1|EC925120
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGEST: gi|26267678|gb|CA818741.1|CA818741
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
EST: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAG GATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
genomic: CAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGgttctaatat ... caatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTG
aattctattcattgcatcagtaaataatctgcttcaaattcctttcaatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGGATGTGAGCTTTGATTGTGCCGGCTTTGATAAAACCATGTCAACCGCTC
ttcctttc CT-rich tract
agtaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctaatatttccatcttaaaaaattctattcattgcatcagtaaataatctgcttcaaattcctttcaatctacagGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGGATGTGAGCTTTGATTGTGCCGGCTTTGATAAAACCATGTCAACCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT