1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggatttgtgtcattttcttcttacatttagtgggttctgcatggaacatttttccacctatcagcttatgcgtgtatgataatttccataaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATACTTACCGAGATGATGGTTCTACTGCTTCCACAGCAGTGCTTGTTGGTAA
species | Vitis vinifera |
transcript | Vv16s0050g02570.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTTGGCTATAA GTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAAATAEST: gi|351026149|gb|FQ428161.1|FQ428161
genomic: AATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATT-GGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
EST: GATTTTGATGAAGCATCCAGAGTTCATGACCAATACCAAATTGGCTATAA GTGAAACATATCATCAAACTGACATGAATTTTCTGGATGCTGAAAGAGATAEST: gi|351015894|gb|FQ431849.1|FQ431849
genomic: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
EST: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAA GTGAAACATATCAACAAACCTGACATGAATTTTCTGGATGCTGAAAGAGATEST: gi|351026397|gb|FQ428409.1|FQ428409
genomic: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAAC-TGACATGAATTTTCTGGATGCTGAAAGAGAT
EST: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAA GTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATAEST: gi|110392544|gb|EC958041.1|EC958041
genomic: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
EST: GAATTTGATGAAGCATCCAGAGTTCATGACAAATGCCCAATTGGCTATAA GTGAAACTTATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATAEST: gi|110690250|gb|EE067195.1|EE067195
genomic: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
EST: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAA GTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
genomic: GAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAgtgagtttaa ... aaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATA
aacatttttccacctatcagcttatgcgtgtatgataatttccataaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATACTTACCGAGATGATGGTTCTACTGCTTCCACAGCAGTGCTTGTTGGTAA
ataatttccataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatttgtgtcattttcttcttacatttagtgggttctgcatggaacatttttccacctatcagcttatgcgtgtatgataatttccataaacttgcagGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATACTTACCGAGATGATGGTTCTACTGCTTCCACAGCAGTGCTTGTTGGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - gtgggtt
- - - - - - - - - - - - - - - - - - - -gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtatg