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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtttgatttacatttctggcctctgaaactatcaagcttcttgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT

Basic information

species Vitis vinifera
transcript Vv16s0050g01860.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G23220.1 (Glycine max), 3'ss of exon 3
gtatagtttgatttacatttctggcctctgaaactatcaagcttct--tgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT
|||| | |  || |||  ||     |||| | | | |     || |  | | |  |  || |  ||| |   ||| ||| | |  | |||| |||||  | ||||||||||| || ||||| ||||||||||| || || ||||||||| | ||||| |||||| | ||||||||   ||| |||    | 
gtat-gctacatctactcttt----ctcttataatgtttgctttatactatagaacttttctgacaattttttttggatgttattccgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTAAGATACTCAAATCAGGTCACAAATCCAGTTACCAAGACC

upper sequence: Vv16s0050g01860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G29030.1 (Glycine max), 3'ss of exon 5
gtatagtttgatttacatttctggcctctgaaactatcaagcttct--tgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT
     || ||  |||||| |      ||| | | | |  |  || |  | | |  |  || |  ||| |   ||| ||| | |  |||||| |||||  | ||||||||||| || ||||| ||||||||||| || || ||||||||| | ||||| ||||||   ||||||||   ||| |||    | 
-----gtatg--ttacatctactttttcttatattgtttactttatactatagaacttttctgacaattttttttggatgttattctgcagATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTTAGATACTCAAATCGGGTCACAAATCCAGTTACCAAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaagcttcttgtggtccgattttctcaaatgcattttgatttgaacctgcagGTTCTCATTGGCATGGTGGGCTTACACTTTCCCAATGACTGGGGCTGCCATTGCAACCATCAGATATTCAAATGAAGTCACAAACATAGTGACCCGATCT
                                    ttttgat  putative branch site (score: 4)
                                   attttgattt  TA-rich tract