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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcaatagttttgtttgtgacttcattttcttaaacttttaatgacatcaatttttcatttgaatttatatcctcagAAATCAAATCCTTCATCAGCATGTGAAGGCTGTGCATCTTCAACTCAGACCATTTGTCTGTGGCATTCCGGGTTGTTGCATGAGATAGAGATAACCATGA

Basic information

species Vitis vinifera
transcript Vv16s0050g01100.t01
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttcttaaacttttaatgacatcaatttttcatttgaatttatatcctcagAAATCAAATCCTTCATCAGCATGTGAAGGCTGTGCATCTTCAACTCAGACCATTTGTCTGTGGCATTCCGGGTTGTTGCATGAGATAGAGATAACCATGA
              ttttaat  putative branch site (score: 3)
                                              tatcctc  putative PPT
              ttttaatgacatcaat  TA-rich tract