1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttccatatttcactgtataattacatcaacaataaccctagcttctatgggcatcatcctcggcccttgtctataatatctgaatttttctaaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAAC
species | Vitis vinifera |
transcript | Vv16s0050g00800.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTTAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|351024434|gb|FQ426243.1|FQ426243
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTTAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|110375864|gb|EC940884.1|EC940884
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|77581466|gb|DV219665.1|DV219665
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|110387630|gb|EC952313.1|EC952313
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|351026337|gb|FQ428349.1|FQ428349
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTTAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|110402322|gb|EC959863.1|EC959863
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGAEST: gi|161716016|gb|FC068769.1|FC068769
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCAEST: gi|351025830|gb|FQ427842.1|FQ427842
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCA
EST: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTA ATGGTGCACCATCCCTTAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
genomic: CCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAgtgagtatac ... taaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGA
tatgggcatcatcctcggcccttgtctataatatctgaatttttctaaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAAC
ttctaaa putative branch site (score: 2)
tttttct CT-rich tract
tctataatatctgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccatatttcactgtataattacatcaacaataaccctagcttctatgggcatcatcctcggcccttgtctataatatctgaatttttctaaattgcagATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - cactgta
- - - - - - - - - - - -catcaac
- - - - - - - - - - - - - - - aataacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - catcctc