1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaagcaattgtggatggaaaatggataccatggattattcactaaatccattatgtttttatttgtgcagcttctaattttcctcttttggtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGCTAGCAGAATTATGGGAAGGGACTATGCCAGACCAGAATGATAAAGCTC
species | Vitis vinifera |
transcript | Vv16s0050g00580.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|110367682|gb|EC931629.1|EC931629
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|30300064|gb|CB976858.1|CB976858
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|34543123|gb|CF511355.1|CF511355
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|83274884|gb|DV938980.1|DV938980
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|30296886|gb|CB973680.1|CB973680
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|110426826|gb|EC993249.1|EC993249
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|34543206|gb|CF511438.1|CF511438
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|34363637|gb|CF405222.1|CF405222
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|30300134|gb|CB976928.1|CB976928
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCCCCTCAACCTGCACTTCTTTATTTG GTGCCTGCTACATTGGGACCCATCATATTCGGATCTTGGATAAGGAAGGAGEST: gi|110368481|gb|EC932461.1|EC932461
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|110405949|gb|EC971507.1|EC971507
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGEST: gi|110363902|gb|EC927533.1|EC927533
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
EST: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
genomic: TGGCAGCTGGTGTTTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtatgtattt ... gtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAG
atccattatgtttttatttgtgcagcttctaattttcctcttttggtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGCTAGCAGAATTATGGGAAGGGACTATGCCAGACCAGAATGATAAAGCTC
ttctaat putative branch site (score: 2)
ttttcctcttttggt CT-rich tract
ttatgtttttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcaattgtggatggaaaatggataccatggattattcactaaatccattatgtttttatttgtgcagcttctaattttcctcttttggtgcttgtagGTGCCTGCTACATTGGGACCCATCATATTCGTATCTTGGATAAGGAAGGAGCTAGCAGAATTATGGGAAGGGACTATGCCAGACCAGAATGATAAAGCTC
aaagcaa
- - - -ttgtgga
- - - - - - - -ggaaaat
- - - - - - - - - - - - - -ccatgga
- - - - - - - - - - - - - - - - - -tattcac
- - - - - - - - - - - - - - - - - - - - - -aaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc