Sequence
atgc intronic sequence ATGC exonic sequence...acttcagttctctgttgtatctttgcatttctatcaaaatagtaactcagttactgacttttcattctagtcatatttcattggttgaatactttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G33510.1 (Glycine max), 3'ss of exon 4
acttcagttctctgttgtatctttgcatttctatca----aaatagtaactcagttactgacttttcattctagtcatatttcattggttgaatactttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
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-atgtaaatcttatttttatttttttgtctatagcatctcatcttgtgtgatgtttcatggaattac-ttttaataattttacaacaa--aaaatgtatttcagGTTATGTATGCCTTTGTAATGCGTCCTGAGAGCTTGCCAAAATCCTATCAAGACTTCATTCAAAAGACTGGGCCAGTTGCAGAGCCTGTATACAAGGCTG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G34070.1 (Glycine max), 3'ss of exon 4
acttcagttctctgttgtatctttgcatttctatcaaaatagtaactcagttactgac-ttttcattctagtcatatttcattggttgaatac--------tttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
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-------ttttcatgtaaatcttaaattttttgtcta--tagcatctcatcttctgtcatgtttcatggaattacttttaataattttacaacaaaaaatgtatttcagGTTATGTATGCCTTTGTAATGCGTCCTGAGAGCTTGCCAAAATCCTATCAAGACTTCATTCAAAAGACCGGGCCAGTTGCAGAGCCTGTATACAAGGCTG
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G51150.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------------------------acttcagttctctgttgtat-ctttgcatttctatcaaaatagtaactcagttactgacttttcattctagtcatatttcattggttgaatactttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
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gtatttgagattcttctcttttcttcctgttctagttagtaatggagatagtatagacgttgaaagacatttttgtgtaccatacgtattctctccaat-gtgatttggt-agtgattatggtcagcaagctaattttgttgcaatgaggtcggtgcagGTTATGTATTCCTTTATAATGCGTCCTGAAACCTTGCCAAAATCATATAGAGAATTTATTCAGAAGACTGGTCCAGTTGCAAGGCCTGTCTACCAAGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965652|gb|GW837251.1|GW837251EST: GCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAG GTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAA
genomic: GCCATTGGAGACATGGAGATTCCTTACTCTTTGCTTTGGCATGTGCCCAGgtaacacaaa ... actttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcagttactgacttttcattctagtcatatttcattggttgaatactttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
tactgac putative branch site (score: 1)
tactttttc putative PPT
atatttcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttcagttctctgttgtatctttgcatttctatcaaaatagtaactcagttactgacttttcattctagtcatatttcattggttgaatactttttcagGTTATGTATGCCTTCATAATGCGTCCTGAGACCTTGCCCAAGTCATATCAAGATTTTATTCAGAAGACTGGGCCAGTTGCACAGCCTGTATACAAGGCTG
- - - - - -ctgttgt
- - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttga