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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctaatctgactattaatgcatgtaatgtgtgctaaaaaaaaaaacacacacacacaccttgaatgtgactgctgtctgctcaggtttggacttatcccagtgtatggaccatgaactgctttttatccattatgtatgttaaacacaagaagttcccaattcgttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCAGTGATACGCTCTGCTTTGACGTTCAAGGGCTTCATATCACTGTTACGCA

Basic information

species Vitis vinifera
transcript Vv16s0039g01410.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g01410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G01680.1 (Glycine max), 3'ss of exon 4
gtacctaatctgactattaatgcatgtaatgtgtgctaaaaaaaaaaacacacacacacaccttgaatgtgactgctgtctgctcaggtttggacttatcccagtgtatggaccatgaactgctttttatccattatgtatgttaaacacaagaagttcccaattcgttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCAGTGATACGCTCTGCTTTGACGTTCAAGGGCTTCATATCACTGTTACGCA
                                                                            |  |   |    |        ||  |  ||||   |     |  ||  ||    | || |  ||||     || |  || | |   ||  ||||| | |||| |||||| | | ||||||||||   | |||||| ||||||||||| |||||||||||||| || ||||| |  || ||| |||  ||||| || ||||
---------------------------------------------------------------------------gtacccattgcaatcgaatacgattactatgtacatagttcaagttgtgttgctactataacatatg-----catagtaattgctatatatgttat-gtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCCTTTTGGCCCGCAGTGATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCA

upper sequence: Vv16s0039g01410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G01680.2 (Glycine max), 3'ss of exon 4
gtacctaatctgactattaatgcatgtaatgtgtgctaaaaaaaaaaacacacacacacaccttgaatgtgactgctgtctgctcaggtttggacttatcccagtgtatggaccatgaactgctttttatccattatgtatgttaaacacaagaagttcccaattcgttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCAGTGATACGCTCTGCTTTGACGTTCAAGGGCTTCATATCACTGTTACGCA---
                                                                            |  |   |    |        ||  |  ||||   |     |  ||  ||    | || |  ||||     || |  || | |   ||  ||||| | |||| |||||| | | ||||||||||   | |||||| ||||||||||| |||||||||||||| || ||||| |  || ||| |||  ||||| || ||||   
---------------------------------------------------------------------------gtacccattgcaatcgaatacgattactatgtacatagttcaagttgtgttgctactataacatatg-----catagtaattgctatatatgttat-gtaggacatcaagTCAGAAGATTGGTCTCGCTTTGTTGCTCCCTTTTGGCCCGCAGTGATACGCTCCGCGTTGACATGGAATGGCCTCACTTCACTCTTGCGCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249778|gb|CD715597.1|CD715597
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|22012614|gb|BQ797648.1|BQ797648
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110360881|gb|EC924323.1|EC924323
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110423065|gb|EC989400.1|EC989400
EST:     CTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: CTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|34547143|gb|CF515375.1|CF515375
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|30327692|gb|CD010954.1|CD010954
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32249517|gb|CD715336.1|CD715336
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32271736|gb|CD720895.1|CD720895
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32269217|gb|CD718376.1|CD718376
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32247466|gb|CD713285.1|CD713285
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32270284|gb|CD719443.1|CD719443
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32268132|gb|CD717291.1|CD717291
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110425522|gb|EC991909.1|EC991909
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32248194|gb|CD714013.1|CD714013
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|32247586|gb|CD713405.1|CD713405
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|34547232|gb|CF515464.1|CF515464
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110421515|gb|EC987813.1|EC987813
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110416731|gb|EC982731.1|EC982731
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
EST: gi|110376167|gb|EC941211.1|EC941211
EST:     GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAG                         GATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA
genomic: GGTGTTCTACTACTGATTATGTCAAATTACTTGAGTCTCTATCTCTTCAGgtacctaatc ... gttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttatccattatgtatgttaaacacaagaagttcccaattcgttattgcagGATATCAAGGCCGCAGATTGGTCTGAGTATGTTGCACCCTTTTGGCCAGCAGTGATACGCTCTGCTTTGACGTTCAAGGGCTTCATATCACTGTTACGCA
           attatgtatgttaaa  TA-rich tract