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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttctttatcatatttcctaaattacagttgttgtaagtctgtattattcctgaatgttgctgttgtttgtattcaaaatgcagATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAA

Basic information

species Vitis vinifera
transcript Vv16s0022g02320.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 4
----------------gtctttctttatcatatttcctaaattacagttgttgtaagtctgtattattcctgaatgttgctgttgtttgtattcaaaatgcagATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAA
                || |  |  || ||       | || |   ||  ||  |      | || || |||| | ||||||   ||| | |    | |||||||||| ||||||||||| || |||||||| |||||||||||  | ||||| ||
gtcaacctttttgaatgtgtcacaatagcaatcagatttaaatcttgtatttagagaatcattttgtttctgatttttgctgccattttt-tgtgcattgcagATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAA

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 4
--------------gtctttctttatcatattt---cctaaa--ttacagttgttgta--agtctgtattattcctgaatgttgctgttgtttgtattcaaaatgcagATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAA
               | | ||  |||   | |      ||||  ||  | ||   | |    | | | |||||  | | | ||  ||   ||| | |    | | |||||||| ||||||||||| || |||||||| |||||||||||  |||||||  |
gttatcctttttgaatgtatcactatagcaatcagatttaaagcttgtatttagagaatcgtttttttttattttttattttttatgccattttt-tgtgcattacagATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACA

upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 4
-gtctttctttatcatatttcctaaattacagttgttgtaagtctgtattattcctgaatgttgctgtt-gtttgtattcaaaatgcagATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAA
  | |||  |  ||   ||   |   ||| |||| |  | | ||     |     |   ||  |||||| | || | ||   ||  ||||| |||||||||||||| || || ||||| |||||| |||| |||||||| ||
gttattttctcgtcgctttgtatgtcttaaagttatctttactcaaatcttcatttttttgaagctgtttgcttttttttttaa--cagATCATTATCAAAATTGCTGCTGGGAATGGAGTTGGACAAATTTTAGTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtaagtctgtattattcctgaatgttgctgttgtttgtattcaaaatgcagATAATTATCAAAATTGCAGCAGGAAATGGCGTTGGAAAAATATTAGTTGGCAA
                                     tttgtattcaaaat  TA-rich tract