Sequence
atgc intronic sequence ATGC exonic sequence...tatgaggccacttagcttaagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G44970.1 (Glycine max), 3'ss of exon 5
tatgaggccacttagct------taagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCA------
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-----agccacttttctcccaactagggaaattttcctttaataggttaggctggcttcatgaaatttcacatagaaactgcatgtttt-gccaactcctgtgcagAGCACTTGCCCATCGCCATTTTTGGAAGCTGAGAGTACCTACATGGAAAATATGCAGGATATATTGCAGCTGAA------GAGCTCTTCAAATTTGAGCAATATTG
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G02050.1 (Glycine max), 3'ss of exon 4
--tatgaggccacttagcttaagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGT---TGAAATGCAGGAGTGTATCTAACTTGAGCA
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ttttcaaagccacttagcttttggaaaaatattctttctagattagttttgtttcatgaaatttcacatagaaaccacaagttt--gcaaactcttgtgcagAGCACTTGTACATCACCAATTATGGAAGCTGCGAGTACATACATGGAAAATATGCAGGATGTGTCCCAGGATGTACATTGCCAAGTTATG-CAAACTCATG--
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G05530.1 (Glycine max), 3'ss of exon 5
---tatgaggccacttagcttaagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGT---TGAAATGCAGGAGTGTATCTAACTTGAGCA
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aatcacaaagctgcttagctggaggaaaatat-tctttctagattagttttgcttcatgaaatttcacatagaaactacaagctt--gcaaactcttgtgcagAGCACTTGTACATCACCAATTTTCGAAGCTGAGAGTACATACGTGGAAAATATGCAGGATGTGCCCCAGTATGTACATTGCCAAGTTATG-CAAACTCTTG--
upper sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G05530.2 (Glycine max), 3'ss of exon 5
tatgaggccacttagcttaagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGT---TGAAATGCAGGAGTGTATCTAA-CTTGAGCA-----------------------------------------------------
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-------------------------------------------------------gaaatttcacatagaaactacaagctt--gcaaactcttgtgcagagcacttgtacatcaccaattttcgaagctgagagtacatacgtggaaaatatgcagGATGTGCCCCAGTATGTACATTGCCAAGTTATGCAAACTCTTGTGCAGAGCACTTGTACATCCCCTATTTTTGAAGCCAAGAGTACATATGTGGAAAATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713481|gb|FC063106.1|FC063106EST: TTTCTGCACAGAAAAAGAAGGAATGTAGTGAGAAAGGGAGTGATGTCCAA AGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAAT
genomic: TTTCTGCACAGAAAAAGAAGGAATGTAGTGAGAAAGGGAGTGATGTCCAAgtaagtttta ... tcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCA
tttttgccacctctt CT-rich tract
ttttacatatagaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgaggccacttagcttaagtaaaacttctttttccagattaggatggtttcatgaagttttacatatagaatgcatgtttttgccacctcttgtgcagAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCA
- - - gccactt
- - - - - - - - - - gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - catgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca