Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatctgatcaataatgtccatgaaagaaaccccagtgaatgtgggttatgttttcttcctagttttttatgcatcctctttatcttcccatttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG

Basic information

species Vitis vinifera
transcript Vv15s0048g02500.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349833342|gb|FQ416720.1|FQ416720
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|28966442|gb|CB345475.1|CB345475
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|30252790|gb|CB970341.1|CB970341
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|30320377|gb|CD003639.1|CD003639
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351053907|gb|FQ441673.1|FQ441673
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349810795|gb|FQ403038.1|FQ403038
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|29785922|gb|CB343280.2|CB343280
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351027229|gb|FQ444478.1|FQ444478
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351037130|gb|FQ456963.1|FQ456963
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110377310|gb|EC942375.1|EC942375
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349832757|gb|FQ422281.1|FQ422281
EST:     TTCCTTTGGTTCTTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351027843|gb|FQ448413.1|FQ448413
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349826381|gb|FQ417878.1|FQ417878
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351025129|gb|FQ433546.1|FQ433546
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110386339|gb|EC950927.1|EC950927
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110371870|gb|EC935997.1|EC935997
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349825430|gb|FQ419347.1|FQ419347
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351020374|gb|FQ445981.1|FQ445981
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|26263771|gb|CA814834.1|CA814834
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110370958|gb|EC934607.1|EC934607
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|34320137|gb|CF372891.1|CF372891
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828161|gb|FQ415489.1|FQ415489
EST:     TTCCTTTGGTTCCTGGTGTGTTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351043958|gb|FQ431389.1|FQ431389
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110382385|gb|EC939338.1|EC939338
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349824211|gb|FQ417598.1|FQ417598
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349825844|gb|FQ423139.1|FQ423139
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351012169|gb|FQ426891.1|FQ426891
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828840|gb|FQ419173.1|FQ419173
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828571|gb|FQ417313.1|FQ417313
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110370897|gb|EC934497.1|EC934497
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|26262848|gb|CA813911.1|CA813911
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349829194|gb|FQ419670.1|FQ419670
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828162|gb|FQ415490.1|FQ415490
EST:     TTCCTTTGGTTCCTGGTGTGTTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|29785480|gb|CB342522.2|CB342522
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349830164|gb|FQ420424.1|FQ420424
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349829701|gb|FQ421219.1|FQ421219
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351028636|gb|FQ446309.1|FQ446309
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351020181|gb|FQ445788.1|FQ445788
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351043743|gb|FQ431295.1|FQ431295
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349826694|gb|FQ418785.1|FQ418785
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110394208|gb|EC959534.1|EC959534
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349808637|gb|FQ405781.1|FQ405781
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351047319|gb|FQ451831.1|FQ451831
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|29784549|gb|CB345412.2|CB345412
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351025965|gb|FQ427977.1|FQ427977
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351019979|gb|FQ439796.1|FQ439796
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351013513|gb|FQ425544.1|FQ425544
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351018592|gb|FQ424699.1|FQ424699
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|26257703|gb|CA808766.1|CA808766
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTCTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351017735|gb|FQ436088.1|FQ436088
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351013914|gb|FQ434066.1|FQ434066
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTAATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349819651|gb|FQ413535.1|FQ413535
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|26265833|gb|CA816896.1|CA816896
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|26258348|gb|CA809411.1|CA809411
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTCTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|18458347|gb|BM436625.1|BM436625
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110237507|gb|EC907678.1|EC907678
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGAATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAN
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351051972|gb|FQ450663.1|FQ450663
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828760|gb|FQ418495.1|FQ418495
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351030422|gb|FQ432360.1|FQ432360
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTCTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|30252704|gb|CB970255.1|CB970255
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349827266|gb|FQ421539.1|FQ421539
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351012825|gb|FQ430388.1|FQ430388
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349826237|gb|FQ416042.1|FQ416042
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349828807|gb|FQ419140.1|FQ419140
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351024478|gb|FQ426287.1|FQ426287
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349827190|gb|FQ421463.1|FQ421463
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|110379659|gb|EC944871.1|EC944871
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351027636|gb|FQ446803.1|FQ446803
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|349830330|gb|FQ420590.1|FQ420590
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351040164|gb|FQ425250.1|FQ425250
EST:     TTCCTTTGGTCCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
EST: gi|351017997|gb|FQ439163.1|FQ439163
EST:     TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGG                         TGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
genomic: TTCCTTTGGTTCCTGGTGTGCTTGAGATTGTAGGCATTGGCTACTCTGGGgtaagttgat ... tttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttttcttcctagttttttatgcatcctctttatcttcccatttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG
                 ttttttatgcatcctc  CT-rich tract
              tagttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatctgatcaataatgtccatgaaagaaaccccagtgaatgtgggttatgttttcttcctagttttttatgcatcctctttatcttcccatttcttgcagTGGTTTGCATACAAGAACCTGATTTTCAAACCAGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - aatgtcc
- - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - -ccccagt
- - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - ttcttcc