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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttcgacaaattttcttgacattattatggtgataacaatttgctataactgttattggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G030299_T02 (Zea mays), 3'ss of exon 4
---gtgaggttcgacaaattttc-----ttgacattattatggtgataacaatttgctataactgttattggtt--atcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG
      |  | ||| |  |||||     || |        |  || ||    ||||  || |   | | |  ||   |||| | | ||| || ||||||||||||||||||||||| ||||  |||||||| ||||||| ||| ||    ||||| ||||| || || ||
gtaactatatacgaaaggttttcaagctttaattcaccctttttgttattcttttgtaattaacataactctttctgtcagTCAGATTTGGGAAGGAAGCTTGCTGAAATGCATAAGGCTGCTAAATCTGATAAAGGATATGGTTTCCCGGTTGACAATACTATTGGAAG

upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G01960.1 (Glycine max), 3'ss of exon 4
gtgaggttcgacaaattttcttgacattattatggtgataacaatttg-ctataactgttattggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG
||||| | |     | || |||   ||||  |   ||    ||  ||   | |||    ||||| ||  ||| ||| | |||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| |||||
gtgagatacctagcaattgcttctgattaggaaaatgtatgcaccttaattgtaatc--tattgcttcccagTCTGATCTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGCTTTGGTTTCGATGTTGATAACACCATTGGCAG

upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G08570.1 (Glycine max), 3'ss of exon 5
gtgaggttcgacaaattttcttgacattattatggtgataacaatttg-ctataactgttattggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG
||||| | |    || || |||   ||||  |   |     ||   |   | | | |  ||||| ||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| || ||
gtgagttacctagaaattgcttctgattaggaaaatttgtgcatcctaattgtgatt--tattgcttcccagTCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28966833|gb|CB345866.1|CB345866
EST:     ATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: ATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|71881177|gb|DT030232.1|DT030232
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
EST: gi|28966778|gb|CB345811.1|CB345811
EST:     CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG                         GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA
genomic: CTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAGgtgaggttcg ... tggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgacattattatggtgataacaatttgctataactgttattggttatcagGCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAG
       acattattat  TA-rich tract