1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccataatccaaccaggaaccactcagtgattactggatggagtattattgttaaaaaagttcttctgaacctatttgttttttgtgcattggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGTTGGTGTCCATCACATGGAGGCTCATGCTTTAGTAGCCAG
species | Vitis vinifera |
transcript | Vv15s0048g00390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTG TTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGEST: gi|71885233|gb|DT034288.1|DT034288
genomic: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTGgtaattgatt ... ggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTG
EST: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTG TTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGEST: gi|71867429|gb|DT016484.1|DT016484
genomic: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTGgtaattgatt ... ggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTG
EST: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTG TTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTG
genomic: GTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTGgtaattgatt ... ggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTG
tattgttaaaaaagttcttctgaacctatttgttttttgtgcattggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGTTGGTGTCCATCACATGGAGGCTCATGCTTTAGTAGCCAG
ttaaaaaagttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataatccaaccaggaaccactcagtgattactggatggagtattattgttaaaaaagttcttctgaacctatttgttttttgtgcattggcaatgtagTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGTTGGTGTCCATCACATGGAGGCTCATGCTTTAGTAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - -ccaacca
- - - - - - - - - ccactca
- - - - - - - - - - - - - - - - -tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt