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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctattcaaattttacacttttttttttcttttaataaattttccccttttattacatcaaatgcttacttccttgatgatcatatatttcctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     GGAAGCTCA-TGGCACCCAG                         AGCTTGAAGACATTTC-TGGAGAAGAAAAGCTGAAG
genomic: GGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|294966590|gb|GW837725.1|GW837725
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|30323265|gb|CD006527.1|CD006527
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     CCGAAAATGGTCTAGTGACTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|161711444|gb|FC061209.1|FC061209
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAG
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|37189632|gb|CF608981.1|CF608981
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGACGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     GCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: GCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG                         AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttattacatcaaatgcttacttccttgatgatcatatatttcctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
                                       tatttccttt  CT-rich tract
                                    atatatttcctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctattcaaattttacacttttttttttcttttaataaattttccccttttattacatcaaatgcttacttccttgatgatcatatatttcctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
ctattca
- - - - - - - - - - - - - - - - aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttg