1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtctccaagttttttgtgtttttgtttccgtttttatttggcccccctccccccccacccttttttttttctgttgctgctatatgcccttttttccttattaacattgaacctctgtatgttttaatttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGGAGGTCACAAGCCAAGCAGATATCATCATCGCAGCTGTAGGACAACCAA
species | Vitis vinifera |
transcript | Vv15s0046g03400.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGEST: gi|30299501|gb|CB976295.1|CB976295
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
EST: TGATTGGCCGAAGGANTATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTEST: gi|110375876|gb|EC940899.1|EC940899
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACT
EST: GCTGCTCTATTACTGCTA AGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGEST: gi|110384578|gb|EC949025.1|EC949025
genomic: GCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
EST: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGEST: gi|7593752|gb|AW708003.1|AW708003
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
EST: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTGEST: gi|110416496|gb|EC982482.1|EC982482
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTG
EST: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGEST: gi|352768044|gb|FQ467443.1|FQ467443
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
EST: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTA AGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
genomic: TGATTGGCCGAAGCAATATTGTTGGGATGCCAGCTGCTCTATTACTGCTAgtaagtctcc ... atttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAG
atatgcccttttttccttattaacattgaacctctgtatgttttaatttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGGAGGTCACAAGCCAAGCAGATATCATCATCGCAGCTGTAGGACAACCAA
ttttttccttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctccaagttttttgtgtttttgtttccgtttttatttggcccccctccccccccacccttttttttttctgttgctgctatatgcccttttttccttattaacattgaacctctgtatgttttaatttcggtagAGAGAAGATGCTACTGTGAGTATAGTCCATTCCAGAACCAAGAACCCCGAGGAGGTCACAAGCCAAGCAGATATCATCATCGCAGCTGTAGGACAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG