Sequence
atgc intronic sequence ATGC exonic sequencegtgattaggaaacttcattctcttattgttgttgactgtgcattgctagctagccctttttgtatatgagtttaataccttagatatgtaatgtgcatgaaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 5
gtgattaggaaacttcattctcttattgttgt-tgactgtgcattgctagctagccctttttgtatatgagtttaataccttag------atatgtaatgtgcatg---aaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
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gtgatgggaaaactccatcttcc-atccttgtattgttgttcact-taggcta---ttttatttatatgctactaatgcccgagtcaacaattcttagcatgtatggaaaaaatgcagGTTTTGGTGACTGCTGTAGTTGTTGGCTTGGTGGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCTTGGCATTATCAT
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 13
gtgattaggaaacttcattctcttattgttgttg--actgtgcattgctagctagccctttttgtatatgagtttaataccttagatatgtaatgtgcatgaaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
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gtgattgggaaactccat-ctcccacccttgttattattgttcacctcaagcta----tactactgtagtaatgtattaac--aagaatgaaa---------aaatgcagGTGTTGGCAACTGCTGTAGCTGTTGGCTTGATAGCTCATTATATTTGTGGCCAAGCTGGTCCAGCTGCTATTGTCATTGGGAATGGCCTAGCATTATCAT
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 9
gtgattaggaaacttcattctcttattgttgttg--actgtgcattgctagctagccctttttgtatatgagtttaataccttagatatgtaatgtgcatgaaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
|||||| ||||||| ||| ||| | ||||| | ||| || | ||||| | ||| |||| ||| | | ||| || || ||||||||| |||| || || || | || |||||| | |||||| ||| | || || ||||||| ||||| ||||| |||||||||||||| |||||||| |
gtgattgggaaactacat-ctcccacccttgttattattgttcacctcaagctatac---------tattgaggtaatgtatta-acaagta-tgaaca----aatgcagGTGTTGGCAACTGCTGTAGCTGTCGGCTTGATGGCTCATTATATTTGCGGCCAAGCTGGTCCCGCTGCTATTGTCATTGGGAATGGCCTAGCATTATCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccctttttgtatatgagtttaataccttagatatgtaatgtgcatgaaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
gtttaat putative branch site (score: 4)
tatatgagtttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattaggaaacttcattctcttattgttgttgactgtgcattgctagctagccctttttgtatatgagtttaataccttagatatgtaatgtgcatgaaaatgcagGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC