Sequence
atgc intronic sequence ATGC exonic sequence...tagcagtcgagtttgcattgatatatttagcaggatatatctattaatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G07850.2 (Glycine max), 3'ss of exon 4
-tagcagtcgagtttgcattgatatatttagcaggatatatctattaatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
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tttgctatattgttatgattg-tgctgttggagtgatactttatatgccagacccttgagtttttatggtgtgaaataatgtagtcatgtgtctaaatcagGGGAAACACAACCCATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCA
upper sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 4
---tagcagtcgagtttgcattgatatatttagcaggatatatctattaatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
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tctttgctatattgttatgattg-tgctgttggagtgatactttatatgccagacccttgagttattatggtgtgaaataatagtcatgtgtc--taaatcagGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCA
upper sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 3'ss of exon 4
-tagcagtcgagtttgcattgatatatttagcaggatatatctattaatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
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gtgagaatc-atttttcctatatatagcctttcatttaataatcttgccatgctagtcttg-gaagttatggtgtctaagtgtact-ttttatgctactagGGGAAACTCAACCTATGAAATGGACTATGAGGCTACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
tattaat putative branch site (score: 2)
tacttcctt putative PPT
atacttataatactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagcagtcgagtttgcattgatatatttagcaggatatatctattaatgagtttgtatcctgctattatatgggatacttataatacttccttgaatcagGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - -tgcattg