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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttatacattcctgctctgtttttaacaagctttaaccttaatttttgtcaaaggccattaccttcagtatgctaaaatagtttattttattacgactttgttttcagATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTAGTAGCAATGAAAGCACTCCAAGGTCTTGGCCAATTTGTAAAACACATGA

Basic information

species Vitis vinifera
transcript Vv15s0046g02260.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690730|gb|EC957082.1|EC957082
EST:     CTGGACTTACAACTCTCAACCTCCAGTCAGTGTATCACATGTGACAAAAG                         ATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTA
genomic: CTGGACTTACAACTCTCAACCTCCAGTCAGTGTATCACATGTGACAAAAGgttttataca ... ttgttttcagATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTA
EST: gi|351033032|gb|FQ446385.1|FQ446385
EST:     CTGGACTTACAACTCTCAACCTCCAGTCAGTGTATCACATGTGACAAAAG                         ATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTA
genomic: CTGGACTTACAACTCTCAACCTCCAGTCAGTGTATCACATGTGACAAAAGgttttataca ... ttgttttcagATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccattaccttcagtatgctaaaatagtttattttattacgactttgttttcagATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTAGTAGCAATGAAAGCACTCCAAGGTCTTGGCCAATTTGTAAAACACATGA
                 tgctaaa  putative branch site (score: 2)
                                           ctttgttttc  putative PPT
             agtatgctaaaatagt  TA-rich tract