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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATA

Basic information

species Vitis vinifera
transcript Vv15s0046g02160.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G61540.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATA
                 ||   |  || |     ||  || ||   |   |    |  |   |||       ||      | ||||  ||||    |||| ||||| ||||| || |||||  | || || | |||||| ||   ||||||||||||| ||||||| || ||||| |||||||||||  |||| ||||
-----------------gtgagggattacaacatttgctcaatccact-gaccagtttagtttagttccttacttgtctctgtttct-ttgtctttagGTACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375135|gb|EC940096.1|EC940096
EST:     AAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGG                         GTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTT
genomic: AAATTGTTCGTGAAGTTGTTACCCACTTGGCAGAGCATGAAGGAGGCGGGgtgagggaat ... ttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATA
                                     tttttcccttgttac  CT-rich tract
      aattcataaaaaatag  TA-rich tract