1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgagctataaatgatggagatggatgtaccttgcccctatatcagttgtctctgattaatgcctctgatgacactaattttttaagttcttggtttcagCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAAAAGCGACCCCCAATTGTTGTGCTAGTAATTTGCCCAACTCGAGAGCTTG
species | Vitis vinifera |
transcript | Vv15s0046g01010.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTG CTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAAEST: gi|110694662|gb|EE071963.1|EE071963
genomic: ATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTGgtaaaacact ... ttggtttcagCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAA
EST: ATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTG CTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAA
genomic: ATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTGgtaaaacact ... ttggtttcagCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAA
gttgtctctgattaatgcctctgatgacactaattttttaagttcttggtttcagCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAAAAGCGACCCCCAATTGTTGTGCTAGTAATTTGCCCAACTCGAGAGCTTG
cactaat putative branch site (score: 2)
ttctt putative PPT
taattttttaagttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgagctataaatgatggagatggatgtaccttgcccctatatcagttgtctctgattaatgcctctgatgacactaattttttaagttcttggtttcagCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAAAAGCGACCCCCAATTGTTGTGCTAGTAATTTGCCCAACTCGAGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - tgatgga
- - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - cccctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac