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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttccccatgataatatttggttaactaaattccatattttaatggttcctgacaagctattttgttaacaaatctgtttttaagaattttattcacttggagctctctctctttcactctgtgtgtgtgtgaagttgttcatcggtaattgtatagtgagcttcatgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG

Basic information

species Vitis vinifera
transcript Vv15s0046g00950.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G027857_T01 (Zea mays), 3'ss of exon 4
gtatgtttttccccatgataatatttggttaactaaattccatattttaatggttcctgacaagctattttgttaacaaatctgtttttaagaattttattcacttggagctctctctctttcactctgtgtgtgtgtgaagttgttcat-cggtaattgtatagtgagcttcatgtg--tatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
                                                                                    || |  | |  ||||   ||        | |  | |||  |||    | | ||| | | ||   || |  |   || | |   |   | || |   ||| ||||||||||| || ||||||| ||| |||||||||||||| || ||||||
-----------------------------------------------------------------------------------attatgcaaagcttta---acaccatctgcaccttttttggctcctgctatttgtaatgctgcaaatacctttcatgcaaaactaatgttatttttttattagGTACTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCATCAG

upper sequence: Vv15s0046g00950.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 4
gtatgtttttccccatgataatatttggttaactaaattccatattttaatggttcctgacaagctattttgttaacaaatctgtttttaagaattttattc-acttggagctctctctctttcactctgtgtgtgtgtgaagttgttca---tcggtaattg--tatagtgagcttcatgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
||||||||||| |  |            || ||   ||   || |  | ||      || ||   ||  |  | || |||    ||| || |||| ||| |  |  |  |    | |||  |    | ||||||  ||    | || |     ||  | ||||  | ||     ||  ||||||| |||||| ||||| |||||||||||||| |||||||| || | ||| ||||||
gtatgtttttctctgtacc---------ttgaccgtatgatatttcctgataaaaaatgcca---taactc-tcaataaa---atttctatgaatattaatagatctttaatcttttcttatgtggtttgtgtggatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135611|gb|CB920949.1|CB920949
EST:     ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAG                         GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
genomic: ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAGgtatgttttt ... tgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
EST: gi|110724261|gb|EE099932.1|EE099932
EST:     ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAG                         GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
genomic: ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAGgtatgttttt ... tgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
EST: gi|34548484|gb|CF516716.1|CF516716
EST:     ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAG                         GTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
genomic: ATGAAGGAATTAGAGTTAAAATCTAGCCGCTTTAAAGAATTGGAGGAGAGgtatgttttt ... tgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtgtgtgaagttgttcatcggtaattgtatagtgagcttcatgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG
                         taattgtata  TA-rich tract