1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcggctacactcttaacaactaacatttataacataagtatggacatattgcatgattaaagtgaagtctaatgtaaaacttacatatgaattttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
species | Vitis vinifera |
transcript | Vv15s0024g00050.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAGEST: gi|122691575|gb|EC980636.1|EC980636
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAGEST: gi|110376873|gb|EC941950.1|EC941950
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAGEST: gi|161713476|gb|FC063101.1|FC063101
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAG ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAGEST: gi|110394067|gb|EC958495.1|EC958495
genomic: ATACTTTGAAGGATTTCTTTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
EST: TTCATGCTACTCCTGCTGCTACTGTTGGAGAG ATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATTGATTTTGTGAATCAG
genomic: TTCATGCTACTCCTGCTGCTACTGTTGGAGAGgttttttttt ... attttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
atattgcatgattaaagtgaagtctaatgtaaaacttacatatgaattttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
aacttac putative branch site (score: 2)
ttttttc putative PPT
taatgtaaaacttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcggctacactcttaacaactaacatttataacataagtatggacatattgcatgattaaagtgaagtctaatgtaaaacttacatatgaattttttcagATTGGTCTGGACAAGGGCTCACGTGGAAGGGAAATCAATTTTGTGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- -gctacac
- - - - - - - - caactaa
- - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaac