Sequence
atgc intronic sequence ATGC exonic sequencegtagatatacatctgctacttagtctcttccaatatttccagaggcaatgcctatttctttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 8
gtagatatacatctgctacttagtctcttccaatatttccagaggcaatgccta--tttctttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
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--------------------------------gtgtgtacttaactcttgaccagcttccactcccaagattgttttgtaccctttgc--tgattttg-attttca-tatagGCAATGGCTCTTGAGGTTCAAAATCTTCTTGTCTCTGGCAAAAAAAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G41790.1 (Glycine max), 3'ss of exon 7
gtagatatacatctgctacttagtctcttccaatatttccagaggcaatg-cctatttct-ttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
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--------------------------------gtgtgtacttaactcttgacccacttccactcccaagattcttctgtaccctttgc--tgattttga--ttttgatatagGCAATGGCTCTTGAGGTTCAAAATCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03580.1 (Glycine max), 3'ss of exon 8
gtagatatacatctgctacttagtctcttccaatat-ttccagaggcaatgcctatttctt-tttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
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--------------------------------gtgtgtactaaactctttacctgtttccagtcccaagattttgtacccttggctgattttgatat-------tgatatagGCAATGGCTCTTGAAGTTCAAAATCTTCTTGTCTCTGGCAAAAAGAAGGAGGCTTTACAGTGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC
upper sequence: Vv15s0021g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G41800.1 (Glycine max), 3'ss of exon 5
gtagatatacatctgctacttagtctcttccaatatttccagaggcaatg-cctatttctttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
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--------------------------------gtgtgtacttaactcttgacctgcttccaatcccaagata-gttttgtaccctttgctgattttga--ttttgatatagGCAATGGCTTCTGAGGTTCAAAATCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
ttcttgct CT-rich tract
tttgaaatttaagta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagatatacatctgctacttagtctcttccaatatttccagaggcaatgcctatttctttttgaaatttaagtaccaccttttgtgttaaatatgcattcttgctgcagGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG