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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacctaactagtgctttgatccaatttgcattgtcaaattgattgctgcaatgctgtttggatttcacagaaatgatataccggagaatgatcactttgtaatttctgatttcatcgttaatttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG

Basic information

species Vitis vinifera
transcript Vv15s0021g02230.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719721|gb|EE095097.1|EE095097
EST:     GATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG                         AGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
genomic: GATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAGgtaacaccta ... atttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
EST: gi|349825285|gb|FQ418006.1|FQ418006
EST:     TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG                         AGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
genomic: TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAGgtaacaccta ... atttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
EST: gi|110691850|gb|EE070424.1|EE070424
EST:     TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG                         AGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
genomic: TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAGgtaacaccta ... atttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
EST: gi|351026648|gb|FQ436301.1|FQ436301
EST:     TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAG                         AGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT
genomic: TTGGGGATGGGACAACTTCAGTGGTTATTGTTGCTGCAGAGTTGCTTAAGgtaacaccta ... atttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataccggagaatgatcactttgtaatttctgatttcatcgttaatttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG
                                              tttctgc  CT-rich tract
                    tttgtaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacacctaactagtgctttgatccaatttgcattgtcaaattgattgctgcaatgctgtttggatttcacagaaatgatataccggagaatgatcactttgtaatttctgatttcatcgttaatttctgcagAGAGCTAATGATCTGGTGAGAAATAAGATTCATCCAACATCTATAATTAGTGGATACAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA