Sequence
atgc intronic sequence ATGC exonic sequencegtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os10g41360.1 (Oryza sativa), 3'ss of exon 3
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgca-tgaagctagagtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
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-------------------------------------gtatgtatctttgatacttctcaattttcagtaatttcaatgctgcttgctatccttttctg-gataata-aattttttataacggttgctctttt-tctttagGAACGTGCTGCTGGGGCACTTGCAAACCTAGCTGCTGATGACAAGTGTAGCATGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTCATGCTTGCTC
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G079031_T03 (Zea mays), 3'ss of exon 3
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
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-------------------------------------gtatgaagccttt--aattctcatatttccaatct-------aactaaggttctgtaccaactagtatctatatatg-----ttgctattcatttttctttagGAACGTGCTGCTGGCGCGCTTGCAAACCTGGCTGCTGATGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTA
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G028796_T01 (Zea mays), 3'ss of exon 3
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
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---------------------------------ttgcacataaggtctgattgcatattagttgttgccatttctagtataactaagtatcta------gaccaattagtctatatatgttcctatatgttt-tctttagGAACGTGCTGCTGGTGCGCTTGCAAACCTGGCTGCCGACGACAAGTGTAGCTTGGAAGTTGCAAAGGCTGGTGGTGTCCATGCTTTGGTTACACTTGCTC
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G37720.1 (Glycine max), 3'ss of exon 4
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgata-atataattgt-ggttggtt-cttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
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---------------------gtaagtttctctgattttatgg----ttatgagcttgctaatgccctt-ctattatccag-taatgttgctgttttacaatgcatgtggcagttggttgattacatggtttttatttttcagGAACGTGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTC
upper sequence: Vv15s0021g01810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G48840.1 (Glycine max), 3'ss of exon 3
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgata-atataattgt-ggttggtt-cttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
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------gtaagtttatctgattttatggt-tatgagcttgttaagggccttccattat-attgcttcttatatcca-gtaatggaagttgctgttttacaatgcatatggcagttggttgattacatggtttttatttttcagGAACGTGCGGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAGGTTGCAACGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34545402|gb|CF513634.1|CF513634EST: CCTTGGTTGATCTTATTTTTAAATGGTCTGCTGGTGGTGATGGAGTTCTG GAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGC
genomic: CCTTGGTTGATCTTATTTTTAAATGGTCTGCTGGTGGTGATGGAGTTCTGgtatgggttc ... atgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
tgttttc CT-rich tract
tgataatataattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgggttctattattctgcattattttctgtctacttatgaagccttatgaatcatcatttttttttgcttgcatgaagctagagtttctgtttggtgataatataattgtggttggttcttgtttgcatgttttcagGAACGTGCAGCTGGTGCACTGGCAAATTTGGCGGCTGATGACAAATGTAGCATGGAGGTTGCACTAGCAGGTGGTGTACATGCTTTGGTTATGCTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG