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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagctatcacttatgaactttgtatttcaagttgattcagtggcagatagttctccactgaagttgcttgaattggttacttttcttctacacttgaagGTACAAATGGATGACATATGGAGAAGCAGGCACTGTCCGGTTGGCAATAGGTTCTGGTCTTCGTCATCATGGGTTATTAGAA

Basic information

species Vitis vinifera
transcript Vv14s0128g00720.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 3'ss of exon 4
gtaagctagctatcacttatgaactttgtatttcaagttgattcagtggcagatagttctccactgaagttgcttgaattggttacttttcttctacacttgaagGTACAAATGGATGACATATGGAGAAGCAGGCACTGTCCGGTTGGCAATAGGTTCTGGTCTTCGTCATCATGGGTTATTAGAA
|||||     ||   | |  ||  | ||| ||   | | | ||  || ||         |    | || |   || |||  | ||  | | |   ||  ||| || ||||||||||||||||||||||||||  | ||   | ||   ||||||||||||||||||  | |||||||  ||   |||
gtaag--gattagttcctg-gatatatgtgttattattggcttttgtagc---------tttgttcaaatcttttaaat--gatatatgtatggaac-tttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAACAGGACTGCAATAGGTTCTGGTCTTATTTATCATGGAATACCTGAA

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g04990.1 (Oryza sativa), 3'ss of exon 4
gtaagctagctatcacttatgaactttgtatttcaagttgattcagtggcagatagttctccactgaagttgcttgaattggttacttttcttctacacttgaagGTACAAATGGATGACATATGGAGAAGCAGGCACTGTCCGGTTGGCAATAGGTTCTGGTCTTCGTCATCATGGGTTATTAGAA
      ||   ||   ||      | | ||| |||       | | || |   |    ||    | || |   || |||    ||  |   || |     || || ||||||||||||||||||||||||||  | ||   ||||   || |||||||||||||||  | | |||||  ||   |||
-----gtaagaattggttcctggatatatatgtca-------ttattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgt-----tgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA

upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 3'ss of exon 3
gtaagctagctatcacttatgaactttgtatttcaagttgattcagtggcagatagttctccactgaagttgcttgaattggttacttttcttctacacttgaagGTACAAATGGATGACATATGGAGAAGCAGGCACTGTCCGGTTGGCAATAGGTTCTGGTCTTCGTCATCATGGGTTATTAGAA
   || | |  |  |   ||    |      |  |  |    | | || |   |    ||    | || |   || |||    ||  |   || |     || || ||||||||||||||||||||||||||  | ||   ||||   || |||||||||||||||  | | |||||  ||   |||
aacagttggggagtaagaattggttcctggatatatatgtcattattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgt-----tgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatagttctccactgaagttgcttgaattggttacttttcttctacacttgaagGTACAAATGGATGACATATGGAGAAGCAGGCACTGTCCGGTTGGCAATAGGTTCTGGTCTTCGTCATCATGGGTTATTAGAA
                                   cttttcttctacactt  CT-rich tract
                                ttactttt  TA-rich tract