Sequence
atgc intronic sequence ATGC exonic sequencegtaattttccacctccttctggtgacaaagaaagtttatcatatgtgctcatttcctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g12390.2 (Oryza sativa), 3'ss of exon 6
----gtaattttccacctccttctggtgacaaagaaagtttatcatatgtg-ctcatttc---ctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
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gtatgtagttactttttttttgtatgtattttttgaaatattttgcatctaattcagcttaaatttttcctcttagACAAACGTCTTGTCAGCCAAGTATGTGATGAAAACAGATGATGATGCTTTTGTCCGTGTGGATGAGATACTTTTATCTTTAGATCGCGTGAACATCAGTC
upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G164072_T01 (Zea mays), 3'ss of exon 4
------------------gtaattttccacctccttctggtgacaaagaaagttta--tcatatgtgctcatttcctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
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gtatatatgatttattgcattattttttattttacttggatgacacttgatattatgtttgcattttctaagcaagtgttctttgcagACAAATGTCCTGTCAGCCAAGTATGTGATGAAAACTGATGATGATGCTTTTGTTCGAGTAGATGAAATACTTTCTTCCCTCGACCGAACCAATATCAGTC
upper sequence: Vv14s0108g00890.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G042607_T01 (Zea mays), 3'ss of exon 4
------------------gtaattttccacctccttctggtgacaaagaaagttta--tcatatgtgctcatttcctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
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gtatatctgatttattgcattattttttattttatttagacgacacttaatattatgtttgcattttctaaacaagtgttctttacagACAAATGTCCTGTCAGCCAACTATGTGATGAAAACTGATGACGATGCTTTTGTTCGAGTAGATGAAGTACTTTCTTCCCTTGACCGAACTAATGTCAACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859857|gb|DT008912.1|DT008912EST: ACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGG ACTGAGGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTT
genomic: ACTATTACAGTCTTATAACCTGGAAGACCATAGCAATTTGCATCTTTGGGgtaattttcc ... tttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccttctggtgacaaagaaagtttatcatatgtgctcatttcctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
tgctcatttcctcttt CT-rich tract
aaagtttatcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattttccacctccttctggtgacaaagaaagtttatcatatgtgctcatttcctctttttaatagACTGAAGCTGTTTCGGCCAAGTATGTGATGAAAACAGATGATGATTCATTTGTTCGTGTGGATGAAGTGCTTGCTTCTTTAAAGAAGACCAAAGTGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG