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...ctcctttcccaactgatctaaggcacagccaaatagactgggtttctttgtttttcttggcatggaatcttgattattcatttatgattcttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCAAGAGAGGGAGAAACTTGAGGACTTTGCTGTAGTTGGTGCAGTCTACAA
species | Vitis vinifera |
transcript | Vv14s0108g00090.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGCCGGGACTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAG TTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCEST: gi|30124717|gb|CB910056.1|CB910056
genomic: AGGCCGGGATTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAGgtacaatgtc ... ttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCC
EST: AGGCCGGGACTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAG TTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCEST: gi|37189687|gb|CF609036.1|CF609036
genomic: AGGCCGGGATTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAGgtacaatgtc ... ttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCC
EST: AGGCCGGGACTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAG TTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCEST: gi|30136184|gb|CB921522.1|CB921522
genomic: AGGCCGGGATTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAGgtacaatgtc ... ttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCC
EST: AGGCCGGGACTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAG TTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCC
genomic: AGGCCGGGATTGCACATATTACTTTGACTTCCCTTTCACCAATTTCTCAGgtacaatgtc ... ttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCC
ctttgtttttcttggcatggaatcttgattattcatttatgattcttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCAAGAGAGGGAGAAACTTGAGGACTTTGCTGTAGTTGGTGCAGTCTACAA
tcttgat putative branch site (score: 4)
ttctt putative PPT
attattcatttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctttcccaactgatctaaggcacagccaaatagactgggtttctttgtttttcttggcatggaatcttgattattcatttatgattcttgaattcagTTGATGGGGTGTCCGTGCCGGAAGAGGAGAGGGAAGGCTACGCATGGCTCCAAGAGAGGGAGAAACTTGAGGACTTTGCTGTAGTTGGTGCAGTCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -ctttccc
- - - - - - - - - - - -cacagcc
- - - - - - - - - - - - - - - aaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgga