Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG

Basic information

species Vitis vinifera
transcript Vv14s0108g00010.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G49070.1 (Glycine max), 3'ss of exon 4
gtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattt-tttggtgaatttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG
|||||  || |        ||   ||   ||    |     | | |  |  |     || | ||   || |   |   |||   |  | |||| ||||| | |   |   |    | |  | ||     | |||| || | | |||  || |      |||||||||| | ||||||||||||||||||||||| |||||||| ||  ||||||||||||| || || ||||| |||||||| |||   || || |||||||
gtaagagatagtcaaccattttgcataacaatctttcaaaatctaatggaaatttaggtgttgagtaaactatgtagtttgagaaagcaatctcattaaaactctctaaaacatctctaaagca----gtaatttgtattctgttttatgga------acagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGGTTGACAGCAAACCCAATTGTCAACTTCTCTGGTGTTATAGGAACTAATG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 4
gtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcag---gggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatg--atttct----------aatttt--ttggtgaatttat--cacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG
|||||  || |        ||   ||   |||   |||      |||||  |     || || | ||   || ||  |   |||   |  | |||| ||||| | |   |   ||| |  |  ||   || ||   ||| ||          |||||   |||     |||||   |||||||||| | ||||||||||||||||||||||| |||||||| ||  ||||||||||||| || || ||||| |||||||| |||   || || |||||||
gtaag--atagtctaccattttgcataacaaggt-ttgaaaatctaatgcaaatttaggtgtgtcgagcaaactgtgtagtttgagaaagcaatctcattaaaactctctaaaaacctatttaactcctgcatcctattcctttatggtagtaatttgtattgtctgttttatggaacagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGGTTGACAGCAAACCCAATTGTCAACTTCTCTGGTGTTATAGGAACTAATG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G05130.1 (Glycine max), 3'ss of exon 4
gtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG
                                                     | ||| ||   | || |   || |||   | |     | | |||    | | | |  ||||| ||  || |   |       | ||  |  |  ||||      |||||||||| | ||||||||||||||||||||||| |||||||| ||  ||||||| ||||| || || ||||| |||||||| ||     | || |||||||
-----------------------------------------------------gtgag-ataagt-cagtcattt-tgtatgtgagaatgtttgattct--tcacaggaaaacatgattaactaaatttgagaaacaaacctcatcatgaa------acagGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGGTTAACAGCAAACCCAATTGTCAACTTCTCTGGCGTTGTAGGAACTAATG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G02380.1 (Glycine max), 3'ss of exon 4
gtaagcaattgatgtttggttcctatcttaagaagttgttttattaatgtcaggggagtatggatgcaattgcttctgttgctcaccccatcttattaagattagatgctaacattatggaccattgtatgatttctaattttttggtgaatttatca-----cagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG
                                                                     |    |  ||   |||     | |    ||| || ||| ||  ||  |   |||||     |||||   |  |||  |  | || ||||     ||||||||| ||||||||||||||||||||||||| |||||||| ||  | || || ||||| || || ||||| |||||||| ||     | || |||||||
--------------------------------------------------------------------gtaagataagtcagtcattttgtatggg-aaggtttgattctt-caccagaaaccat-----gatttactaaatttgagaaacttcatcatgaaacagGTGGAAGTCCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTGGGTTTAACAGCAAACCCAATTGTCAACTTCTCCGGCGTTGTAGGAACTAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584194|gb|DV221153.1|DV221153
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71856250|gb|DT005305.1|DT005305
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110377742|gb|EC942827.1|EC942827
EST:     CAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: CAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71854808|gb|DT003863.1|DT003863
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110397375|gb|EC963110.1|EC963110
EST:     TTAACTTTAAAGTTCCTGACAAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: TTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|294966303|gb|GW837554.1|GW837554
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110702383|gb|EE081035.1|EE081035
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71877395|gb|DT026450.1|DT026450
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77584446|gb|DV221292.1|DV221292
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110685633|gb|EE062525.1|EE062525
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110380238|gb|EC945486.1|EC945486
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161708366|gb|FC057042.1|FC057042
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAA
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAA
EST: gi|71854973|gb|DT004028.1|DT004028
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110694680|gb|EE071996.1|EE071996
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71855582|gb|DT004637.1|DT004637
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110703939|gb|EE081313.1|EE081313
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71874996|gb|DT024051.1|DT024051
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71865784|gb|DT014839.1|DT014839
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161715473|gb|FC069049.1|FC069049
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77588481|gb|DV223453.1|DV223453
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|352781706|gb|FQ469004.1|FQ469004
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71856067|gb|DT005122.1|DT005122
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAG
EST: gi|110693440|gb|EE069671.1|EE069671
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110691473|gb|EE069615.1|EE069615
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71875650|gb|DT024705.1|DT024705
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|352782173|gb|FQ470075.1|FQ470075
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71875894|gb|DT024949.1|DT024949
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71859244|gb|DT008299.1|DT008299
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71859018|gb|DT008073.1|DT008073
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110693844|gb|EE070431.1|EE070431
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71876956|gb|DT026011.1|DT026011
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71857546|gb|DT006601.1|DT006601
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTA
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTA
EST: gi|71856209|gb|DT005264.1|DT005264
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|32268425|gb|CD717584.1|CD717584
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110701982|gb|EE080178.1|EE080178
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|161710352|gb|FC058989.1|FC058989
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAA-GGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|71858139|gb|DT007194.1|DT007194
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|110376066|gb|EC941106.1|EC941106
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|77583183|gb|DV220629.1|DV220629
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
EST: gi|37184727|gb|CF604081.1|CF604081
EST:     GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG                         GTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG
genomic: GCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAGgtaagcaatt ... tttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaacattatggaccattgtatgatttctaattttttggtgaatttatcacagGTGGAACTCCAGTACTTGCATGACTATGCTGGGATAAGCACAAGCATTGGGTTGACAGCGAATCCCATTGTTAACTTCTCAGGTACCATTGGGACTAATG
                 attgtatgatttctaa  TA-rich tract