1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttcattcagccaagtcaatattactttttgtttgagcctcctcctgagtttgtagctgaatatttttatttatacccttttatttaattttaaattcttttccattctggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGCTATACTCCTCTAGTCCAGTGTACGAAGCATATGTGTCCCATTCGAGTC
species | Vitis vinifera |
transcript | Vv14s0083g01160.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGEST: gi|110371120|gb|EC934895.1|EC934895
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCEST: gi|30137657|gb|CB922995.1|CB922995
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTC
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGEST: gi|32269012|gb|CD718171.1|CD718171
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGEST: gi|30127202|gb|CB912541.1|CB912541
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGEST: gi|30128277|gb|CB913616.1|CB913616
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
EST: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGA GGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
genomic: TGCACCTGTGGTTGCCAGAACAACATTACTCAGCCAGGGAGCTGTGTAGAgtaagttcat ... tggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAG
tttttatttatacccttttatttaattttaaattcttttccattctggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGCTATACTCCTCTAGTCCAGTGTACGAAGCATATGTGTCCCATTCGAGTC
atttaat putative branch site (score: 4)
ttcttttccattct putative PPT
atttatacccttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcattcagccaagtcaatattactttttgtttgagcctcctcctgagtttgtagctgaatatttttatttatacccttttatttaattttaaattcttttccattctggtttacagGGAAGACTCGCCATATTTGGCTTCAGTTGTCTCAGGTTCTGGGAAGAATAGCTATACTCCTCTAGTCCAGTGTACGAAGCATATGTGTCCCATTCGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC