Sequence
atgc intronic sequence ATGC exonic sequence...tagcaaatttgttatagataatcctcatagtatcatgcaatttatgggagtttttgaaagcatacccatatgcaaagctgtttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G04900.1 (Glycine max), 3'ss of exon 4
--tagcaaatttgttata-gataatcctcatagt-atcatgcaatttatgggagtttttgaaagcatacccatatgcaaagctgt-ttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
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gtgagcatatgaattgcataatgctactaaaggttgtgtttcaactttcaaccatgttta----tataattagatggttctttgtattgccttttatattt-tagGGAACGGCTGATGATGTAGTGGATTGCTCCCATGGTAAGCAACTTTGGGAAAATTGTAAACAAAAGTACGAGCCCTTATGGATTAAAGGAGGAAATCACT
upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G06890.1 (Glycine max), 3'ss of exon 4
--tagcaaatttgttatagataatcctcatag--tatcatgcaatttatgggagtttttgaaagcatacccatatgcaaagctgt-ttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
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gtgagcatatgaattgtataatgctacaaaaggttgtggttcaactttcaaccgtgttta----tatactgagattgttctttgtattgccttttatactt-tagGGAACAGCTGATGATGTAGTGGATTGCTCCCATGGGAAGCAACTTTGGGAAAATTGTAAACAAAAGTACGAGCCCTTATGGATTAAAGGAGGAAATCACT
upper sequence: Vv14s0083g00800.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G28090.1 (Glycine max), 3'ss of exon 4
--------tagcaaatttgttatagata-atcctcatagtatcatgcaatttatgggagtttttgaaagcatacccatatgcaaagctgtttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
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taattggtcaactgttttgttaaaggcctatgctagtagcctaatgcaatcagcgta---tagtaagatggtatttttttgtgttg--gcttatgtatc----ttttagGGAACAGCTGATGATGTAGTAGATTACTCCCACGGGAAGCAACTTTGGGAACATTGCAAACAAAAGTATGAACCCCTATGGATTAAAGGAGGAAATCATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggagtttttgaaagcatacccatatgcaaagctgtttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
tttttgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagcaaatttgttatagataatcctcatagtatcatgcaatttatgggagtttttgaaagcatacccatatgcaaagctgtttatatctcatgcttgcagGGAACTGCAGATGATGTTGTGGATTTCTCTCATGGTAAGCAGCTTTGGGAGCTTTGTAAAGAGAAATATGAACCATTATGGATTAAAGGAGGGAATCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - atcctca
- - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - -ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa