Sequence
atgc intronic sequence ATGC exonic sequence...gaatgtctaacatgtccatatatcataacaagatttctggttggtagcaaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G51520.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctggttggtagcaaaatt--ttgcttctccaaaggca----catttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
| ||| || | | || || | | | | | || || | | ||| | || || | | | ||||| | | | | | | |||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| || ||||| ||||||||||||||
gtaagctactcttataatctgtacctctgatgcagaatacattttgaaatttttgatgaagtctgtttagtaaattgattcatgcttaaaggccaacttgtgctcattggcatcttcaattatttttttgattgtgacttcattttttttggtatgatctggtcgtcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G28600.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctg----gttggtagc----aaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
| ||| || | | || || | | | | | || || |||| | | |||||| || || | | | | | | | ||| | | |||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| || ||||| ||||||||||||||
gtaagctacttttataatctgtacctctgatgtggaatacattttaaaattttttatgaagtctgtttagtaaattgattcatgcttaaatgccaacttgtgctgcattggcgtcttcaattattttgtttatcgacttcatcttattttttggtatgatttggtcatcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G20300.1 (Glycine max), 3'ss of exon 8
------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctg----gttggtagc--aaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
| ||| || | | || ||| | | | | | || || |||| | | || | || || | | | | || | | ||| | ||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| || | ||| ||||||||||||||
gtaagctactcttataatctatacctctgacacggaatacattttgaatttttttatgaagtctgtttagtaaattgatttatgcttaaaggctaacttgtgctgcattggcatcttcaattattttttttactgtgacttcattttttttgtatgatttggctgttagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACTTGTAATGGGAACCTTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcaaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
ttctaaa putative branch site (score: 2)
ccttttcatt putative PPT
ttttcattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatgtctaacatgtccatatatcataacaagatttctggttggtagcaaaattttgcttctccaaaggcacatttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
gaatgtc
- - - - -acatgtc
- - - - - - - - - - - - - aacaaga
- - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcct