1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagattcatttcttaaatcttgtgcttttgttacttctgcttgtagctgcagtataatttgcataggtcttaactccaattttaaaatgaattgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGGGGAACCCATTGGAGTGCATAAAGCAGTGGAGCTAATTGCATCTCACCT
species | Vitis vinifera |
transcript | Vv14s0081g00440.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|30127647|gb|CB912986.1|CB912986
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|71855957|gb|DT005012.1|DT005012
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|33404459|gb|CF210086.1|CF210086
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGGGGCATCTAATTGTATTGTCAGAGTCCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|161718668|gb|FC067950.1|FC067950
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|110356545|gb|EC919451.1|EC919451
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|110698109|gb|EE075743.1|EE075743
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGEST: gi|110732776|gb|EE108358.1|EE108358
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCGCTCCAAGAAGATAGGGTTGTTGAAGTAGTANEST: gi|110718620|gb|EE095661.1|EE095661
genomic: AAAATCCATTCAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
EST: CAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAG AAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
genomic: CAAGAGGCATCTAATTGTATTGTCAGAGTTCTTGGAGCAGgtgttgttca ... attgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAG
gctgcagtataatttgcataggtcttaactccaattttaaaatgaattgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGGGGAACCCATTGGAGTGCATAAAGCAGTGGAGCTAATTGCATCTCACCT
tcttaac putative branch site (score: 2)
aattttaaaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagattcatttcttaaatcttgtgcttttgttacttctgcttgtagctgcagtataatttgcataggtcttaactccaattttaaaatgaattgttgcagAAGACCTACCCATTTTTGCACTCCAAGATGATAGGGTTGTTGAAGTAGTAGGGGAACCCATTGGAGTGCATAAAGCAGTGGAGCTAATTGCATCTCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - -tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatga